- p - Variable in class gui.GuiRunAnalysis
-
- ParetoAnalysis - Class in analyses
-
Class to run a pareto analysis.
- ParetoAnalysis(Bind, String, boolean) - Constructor for class analyses.ParetoAnalysis
-
- ParetoAnalysisResult - Class in analyses.result
-
Class representing the result of a simple FBA analysis.
- ParetoAnalysisResult(Map<Objective, List<Double>>, Map<ReacAnalysisResult, Double>, Map<TwoReacsAnalysisResult, Double>) - Constructor for class analyses.result.ParetoAnalysisResult
-
- parm - Variable in class general.GLPKBind
-
- parseFile() - Method in class analyses.ParetoAnalysis
-
Parses the experimental file and gets the objective and experimental
values.
- percentage - Static variable in class thread.ThreadFVA
-
Percentage of the FVA that is completed.
- percentage - Static variable in class thread.ThreadKO
-
Percentage of the KO that is completed.
- percentage - Static variable in class thread.ThreadReac
-
Percentage of the analysis that is completed.
- percentage - Static variable in class thread.ThreadTwoReacs
-
Percentage of the analysis that is completed.
- PhenotypicPhaseComparator - Class in analyses
-
Class used to compare two phenotype phases.
- PhenotypicPhaseComparator(Map<Integer, FVAResult>) - Constructor for class analyses.PhenotypicPhaseComparator
-
- plot() - Method in class analyses.result.AnalysisResult
-
Plots the results.
- plot() - Method in class analyses.result.CompFVAResult
-
- plot() - Method in class analyses.result.DRResult
-
- plot() - Method in class analyses.result.FBAResult
-
- plot() - Method in class analyses.result.FVAResult
-
- plot() - Method in class analyses.result.KOResult
-
- plot() - Method in class analyses.result.ParetoAnalysisResult
-
- plot() - Method in class analyses.result.ReacAnalysisResult
-
- plot() - Method in class analyses.result.RFBAResult
-
- plot(AbstractDrawer, Color) - Method in class analyses.result.TwoReacsAnalysisResult.MyPlot
-
- plot() - Method in class analyses.result.TwoReacsAnalysisResult
-
- plot - Variable in class applications.FlexfluxCompFVA
-
- plot - Variable in class applications.FlexfluxDR
-
- plot - Variable in class applications.FlexfluxFBA
-
- plot - Variable in class applications.FlexfluxFVA
-
- plot - Variable in class applications.FlexfluxKO
-
- plot - Variable in class applications.FlexfluxPareto
-
- plot - Variable in class applications.FlexfluxReac
-
- plot - Variable in class applications.FlexfluxRFBA
-
- plot - Variable in class applications.FlexfluxTwoReacs
-
- plotAll - Variable in class analyses.ParetoAnalysis
-
Decides if all 2D and 3D results are plot or only the best result.
- plotAll - Variable in class applications.FlexfluxPareto
-
- pointIndex - Variable in class analyses.result.ReacAnalysisResult
-
Map to get the group index of a point.
- pointIndex - Variable in class analyses.result.TwoReacsAnalysisResult
-
Map to get the group index of a point.
- precision - Variable in class applications.FlexfluxCompFVA
-
- precision - Variable in class applications.FlexfluxDR
-
- precision - Variable in class applications.FlexfluxFBA
-
- precision - Variable in class applications.FlexfluxFVA
-
- precision - Variable in class applications.FlexfluxKO
-
- precision - Variable in class applications.FlexfluxPareto
-
- precision - Variable in class applications.FlexfluxReac
-
- precision - Variable in class applications.FlexfluxRFBA
-
- precision - Variable in class applications.FlexfluxTwoReacs
-
- prepareSolver() - Method in class general.Bind
-
Transforms all problem entities, constraints an interaction into solver
entities, constraints an interactions.
- previousArguments - Variable in class gui.MainFrame
-
- probabilityInteraction - Variable in class interaction.Interaction
-
- probabilityRelation - Variable in class interaction.Relation
-