FlexfluxRFBA

java.lang.Object
- applications.FlexfluxRFBA

```
public class FlexfluxRFBA
extends java.lang.Object
```
Computes a time dependent analysis given a metabolic network, an objective function and constraints.

This analysis is based on external metabolic concentrations and cell density.

Given initial metabolite concentrations, cell density, a time step and a number of iterations, this analysis returns the value of each metabolite and cell density for each time

Author:

lmarmiesse 6 mars 2013

Field Summary

Fields
Modifier and Type	Field and Description
`java.lang.String`	`biomassReac`
`java.lang.String`	`condFile`
`double`	`deltaT`
`java.lang.String`	`entities`
`java.lang.String`	`example`
`boolean`	`extended`
`boolean`	`h`
`java.lang.String`	`intFile`
`int`	`iterations`
`double`	`liberty`
`java.lang.String`	`message`
`boolean`	`nointInSolver`
`java.lang.String`	`outName`
`boolean`	`plot`
`int`	`precision`
`java.lang.String`	`sbmlFile`
`java.lang.String`	`solver`
`double`	`X`

Constructor Summary

Constructors
Constructor and Description

FlexfluxRFBA()

Constructors
Constructor and Description
`FlexfluxRFBA()`

Method Summary

Methods
Modifier and Type Method and Description

static void main(java.lang.String[] args)
- Methods inherited from class java.lang.Object
  clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods
Modifier and Type	Method and Description
`static void`	`main(java.lang.String[] args)`

Field Detail

message
```
public java.lang.String message
```

example
```
public java.lang.String example
```

sbmlFile
```
public java.lang.String sbmlFile
```

condFile
```
public java.lang.String condFile
```

intFile
```
public java.lang.String intFile
```

solver
```
public java.lang.String solver
```

nointInSolver
```
public boolean nointInSolver
```

plot
```
public boolean plot
```

entities
```
public java.lang.String entities
```

outName
```
public java.lang.String outName
```

X
```
public double X
```

biomassReac
```
public java.lang.String biomassReac
```

deltaT
```
public double deltaT
```

iterations
```
public int iterations
```

liberty
```
public double liberty
```

precision
```
public int precision
```

extended
```
public boolean extended
```

h
```
public boolean h
```

Constructor Detail
- FlexfluxRFBA
```
public FlexfluxRFBA()
```

Method Detail

main

public static void main(java.lang.String[] args)

Class FlexfluxRFBA

Field Summary

Constructor Summary

Method Summary

Methods inherited from class java.lang.Object

Field Detail

message

example

sbmlFile

condFile

intFile

solver

nointInSolver

plot

entities

outName

X

biomassReac

deltaT

iterations

liberty

precision

extended

h

Constructor Detail

FlexfluxRFBA

Method Detail

main