- addAddedIntercation(Interaction) - Method in class interaction.InteractionNetwork
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- addBinaryEntity(BioEntity) - Method in class interaction.InteractionNetwork
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- addChoice(String) - Method in class gui.ChoiceComponent
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- addedInteractions - Variable in class interaction.InteractionNetwork
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List of interation added in the interaction file.
- addExpValue(double, double) - Method in class analyses.result.ReacAnalysisResult
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Adds an experimental value.
- addExpValue(double, double, double) - Method in class analyses.result.TwoReacsAnalysisResult
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Adds an experimental value.
- addGPRIntercation(Interaction) - Method in class interaction.InteractionNetwork
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- addIntEntity(BioEntity) - Method in class interaction.InteractionNetwork
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- addInteractionToCheck(Interaction) - Method in class interaction.InteractionNetwork
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- addLine(BioEntity, double[]) - Method in class analyses.result.FVAResult
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Adds a line to the plot.
- addLine(BioEntity, double) - Method in class analyses.result.KOResult
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Adds a value to the map.
- addNetworkEntities() - Method in class general.Bind
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Adds entities to the problem from the metaboblic network.
- addNumEntity(BioEntity) - Method in class interaction.InteractionNetwork
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- addProbaUnique(Unique) - Method in class interaction.InteractionNetwork
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- addRelation(Relation) - Method in class interaction.RelationWithList
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Adds a relation to the list of relations.
- addRightEntityType(BioEntity, boolean, boolean) - Method in class general.Bind
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Adds an entity to the problem.
- addValue(double, double) - Method in class analyses.result.ReacAnalysisResult
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Adds a value to the results.
- addValue(double[]) - Method in class analyses.result.TwoReacsAnalysisResult
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- addValues(double, Map<String, Double>) - Method in class analyses.result.RFBAResult
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Add a value for all entities at a given time.
- analyses - package analyses
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- analyses.result - package analyses.result
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- Analysis - Class in analyses
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Superclass of all analyses.
- Analysis(Bind) - Constructor for class analyses.Analysis
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- AnalysisResult - Class in analyses.result
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Superclass of all results.
- AnalysisResult() - Constructor for class analyses.result.AnalysisResult
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- And - Class in interaction
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This class represents an And relation.
- And() - Constructor for class interaction.And
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- AndCPLEX - Class in interaction.cplex
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CPLEX version of an AND relation.
- AndCPLEX() - Constructor for class interaction.cplex.AndCPLEX
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- applications - package applications
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- applications.gui - package applications.gui
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- areSameGroup(double[]...) - Method in class analyses.result.TwoReacsAnalysisResult.MyPlot
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- argComponents - Variable in class gui.MainFrame
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- argsPanel - Variable in class gui.MainFrame
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- argument - Variable in class gui.ArgumentComponent
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- ArgumentComponent - Class in gui
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- ArgumentComponent(String) - Constructor for class gui.ArgumentComponent
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