- end - Variable in class analyses.ReacAnalysis
-
Final value
- end - Variable in class analyses.result.ReacAnalysisResult
-
Parameters of the varying variable.
- end - Variable in class analyses.result.TwoReacsAnalysisResult
-
Parameters of the varying variables.
- end - Variable in class analyses.TwoReacsAnalysis
-
Final values
- end - Variable in class applications.FlexfluxReac
-
- end - Variable in class applications.FlexfluxTwoReacs
-
- end() - Method in class general.Bind
-
- end() - Method in class general.CplexBind
-
- end() - Method in class general.GLPKBind
-
- end2 - Variable in class analyses.result.TwoReacsAnalysisResult
-
Parameters of the varying variables.
- end2 - Variable in class analyses.TwoReacsAnalysis
-
Final values
- end2 - Variable in class applications.FlexfluxTwoReacs
-
- entities - Variable in class analyses.KOAnalysis
-
Entities to run the KO analysis on.
- entities - Variable in class analyses.ReacAnalysis
-
Varying entity with it's coefficient (1) to make a constraint.
- entities - Variable in class analyses.result.RFBAResult
-
List of concerned entities.
- entities - Variable in class applications.FlexfluxCompFVA
-
- entities - Variable in class applications.FlexfluxFVA
-
- entities - Variable in class applications.FlexfluxKO
-
- entities - Variable in class applications.FlexfluxRFBA
-
- entities - Variable in class general.Constraint
-
map containing entities and their coefficients.
- entities - Variable in class general.Objective
-
Entities composing the function.
- entities - Variable in class thread.ThreadFVA
-
Contains all entities to treat.
- entities - Variable in class thread.ThreadKO
-
Contains all entities to treat.
- entities - Variable in class thread.ThreadReac
-
The entity to make vary.
- entities1 - Variable in class analyses.TwoReacsAnalysis
-
First varying entity with it's coefficient (1) to make a constraint.
- entities1 - Variable in class thread.ThreadTwoReacs
-
The entities to make vary.
- entities2 - Variable in class analyses.TwoReacsAnalysis
-
Second varying entity with it's coefficient (1) to make a constraint.
- entities2 - Variable in class thread.ThreadTwoReacs
-
- entitiesCopy - Variable in class thread.ThreadFVA
-
- entitiesToSolverVars() - Method in class general.Bind
-
Transforms problem entities into the right solver variables.
- entitiesToSolverVars() - Method in class general.CplexBind
-
- entitiesToSolverVars() - Method in class general.GLPKBind
-
- entity - Variable in class interaction.Unique
-
Entity concerned by the relation.
- epsilon - Static variable in class general.Vars
-
Value used to approximate inequalities.
- EqInteraction - Class in interaction
-
Class representing Eq interactions.
- EqInteraction(Relation, Relation) - Constructor for class interaction.EqInteraction
-
- EqInteractionCplex - Class in interaction.cplex
-
CPLEX version of the EqInteraction.
- EqInteractionCplex(Relation, Relation) - Constructor for class interaction.cplex.EqInteractionCplex
-
- example - Variable in class applications.FlexfluxCompFVA
-
- example - Variable in class applications.FlexfluxDR
-
- example - Variable in class applications.FlexfluxFBA
-
- example - Variable in class applications.FlexfluxFVA
-
- example - Variable in class applications.FlexfluxKO
-
- example - Variable in class applications.FlexfluxPareto
-
- example - Variable in class applications.FlexfluxReac
-
- example - Variable in class applications.FlexfluxRFBA
-
- example - Variable in class applications.FlexfluxTwoReacs
-
- exchangeInteractions - Variable in class general.Bind
-
Map used for rFBA to link exchange reactions to external metabolites.
- executableClasses - Variable in class gui.MainFrame
-
- executableList - Variable in class gui.MainFrame
-
- experimentalValues - Variable in class analyses.ParetoAnalysis
-
List containing all experimental values for each objective.
- expFile - Variable in class applications.FlexfluxPareto
-
- expValues - Variable in class analyses.result.ReacAnalysisResult
-
Experimental values.
- expValues - Variable in class analyses.result.TwoReacsAnalysisResult
-
Experimental values.
- extended - Variable in class applications.FlexfluxCompFVA
-
- extended - Variable in class applications.FlexfluxDR
-
- extended - Variable in class applications.FlexfluxFBA
-
- extended - Variable in class applications.FlexfluxFVA
-
- extended - Variable in class applications.FlexfluxKO
-
- extended - Variable in class applications.FlexfluxPareto
-
- extended - Variable in class applications.FlexfluxReac
-
- extended - Variable in class applications.FlexfluxRFBA
-
- extended - Variable in class applications.FlexfluxTwoReacs
-