analyses

Class KOAnalysis

java.lang.Object

analyses.Analysis

analyses.KOAnalysis

public class KOAnalysis
extends Analysis

Class to run a KO analysis.

Author:

lmarmiesse 5 avr. 2013

Field Summary

Fields

Modifier and Type	Field and Description
protected java.util.Map<java.lang.String,parsebionet.biodata.BioEntity>	entities Entities to run the KO analysis on.
protected int	mode 0 : the KO is performed on reactions. 1 : the KO is performed on genes.
protected java.util.List<ResolveThread>	threads List containing the threads that will knock out each entity.

Fields inherited from class analyses.Analysis

b

Constructor Summary

Constructors

Constructor and Description
KOAnalysis(Bind b, int mode, java.util.Map<java.lang.String,parsebionet.biodata.BioEntity> entities)

Method Summary

Methods

Modifier and Type	Method and Description
KOResult	runAnalysis() Runs the analysis.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

mode

protected int mode

0 : the KO is performed on reactions. 1 : the KO is performed on genes.

entities

protected java.util.Map<java.lang.String,parsebionet.biodata.BioEntity> entities

Entities to run the KO analysis on.

threads

protected java.util.List<ResolveThread> threads

List containing the threads that will knock out each entity.

Constructor Detail

KOAnalysis

public KOAnalysis(Bind b,
          int mode,
          java.util.Map<java.lang.String,parsebionet.biodata.BioEntity> entities)

Method Detail

runAnalysis

public KOResult runAnalysis()

Description copied from class: Analysis

Runs the analysis.

Specified by:

runAnalysis in class Analysis

Returns:

An object containing the result of the analysis.