applications

Class FlexfluxPareto

java.lang.Object

applications.FlexfluxPareto

public class FlexfluxPareto
extends java.lang.Object

The goal of this analysis is to determine what objective (or set of objectives) an organism is optimizing.

It take as an argument a file containing the objective functions to test and experimental values, and finds out (in one, two and three dimensions) what objective optimization is closest to the experimental values.

The objectives that are optimized are those for witch the experimental values are the closest to the pareto surface.

The pareto surface is the surface in which all points are pareto optimal. This means that to increase the value of an objective, you must decrease another.

In this analysis, the objective function of the condition file is optional and ignored if present.

Author:

lmarmiesse 6 mars 2013

Field Summary

Fields

Modifier and Type	Field and Description
java.lang.String	condFile
java.lang.String	example
java.lang.String	expFile
boolean	extended
boolean	h
java.lang.String	intFile
double	liberty
java.lang.String	message
boolean	nointInSolver
java.lang.String	outName
boolean	plot
boolean	plotAll
int	precision
java.lang.String	sbmlFile
java.lang.String	solver

Constructor Summary

Constructors

Constructor and Description
FlexfluxPareto()

Method Summary

Methods

Modifier and Type	Method and Description
static void	main(java.lang.String[] args)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

message

public java.lang.String message

example

public java.lang.String example

sbmlFile

public java.lang.String sbmlFile

condFile

public java.lang.String condFile

intFile

public java.lang.String intFile

expFile

public java.lang.String expFile

solver

public java.lang.String solver

nointInSolver

public boolean nointInSolver

plot

public boolean plot

outName

public java.lang.String outName

liberty

public double liberty

precision

public int precision

extended

public boolean extended

plotAll

public boolean plotAll

h

public boolean h

Constructor Detail

FlexfluxPareto

public FlexfluxPareto()

Method Detail

main

public static void main(java.lang.String[] args)