- obj - Variable in class general.Bind
-
Objective of the problem.
- obj1 - Variable in class analyses.result.CompFVAResult
-
First initial objective value.
- obj2 - Variable in class analyses.result.CompFVAResult
-
Second initial objective value.
- Objective - Class in general
-
This class represents the objective function of the FBA.
- Objective() - Constructor for class general.Objective
-
- Objective(BioEntity[], double[], String, boolean) - Constructor for class general.Objective
-
- objectives - Variable in class analyses.ParetoAnalysis
-
List of objectives.
- objectivesBounds - Variable in class analyses.ParetoAnalysis
-
key : an objective, value : its lower and upper bounds
- objName - Variable in class analyses.result.ReacAnalysisResult
-
- objName - Variable in class analyses.result.TwoReacsAnalysisResult
-
- objValue - Variable in class analyses.result.FBAResult
-
Value of the objective function.
- objValue - Variable in class analyses.result.FVAResult
-
Value of the original objective value that was used as a constraint.
- okSolvers - Static variable in class applications.FlexfluxTest
-
- oneDResults - Variable in class analyses.result.ParetoAnalysisResult
-
1D results for all the objectives.
- operation - package operation
-
- operation - Variable in class interaction.Unique
-
Operation of the relation.
- Operation - Class in operation
-
Superclass of all operations.
- Operation() - Constructor for class operation.Operation
-
- OperationCPLEX - Interface in operation
-
Interface for CLPEX versions of operations.
- OperationEq - Class in operation
-
Class representing the operation "Equal to" : =
- OperationEq() - Constructor for class operation.OperationEq
-
- OperationEqCPLEX - Class in operation
-
CPLEX version of OperationEq.
- OperationEqCPLEX() - Constructor for class operation.OperationEqCPLEX
-
- operationFactory - Variable in class general.Bind
-
Will permit to create the right operations.
- OperationFactory - Class in operation
-
Class that creates the right type of Operation.
- OperationFactory() - Constructor for class operation.OperationFactory
-
- OperationFactoryCPLEX - Class in operation
-
CPLEX version of the OperationFactory.
- OperationFactoryCPLEX() - Constructor for class operation.OperationFactoryCPLEX
-
- OperationGe - Class in operation
-
Class representing the operation "Greater or equal to" : >=
- OperationGe() - Constructor for class operation.OperationGe
-
- OperationGeCPLEX - Class in operation
-
CPLEX version of OperationGe.
- OperationGeCPLEX() - Constructor for class operation.OperationGeCPLEX
-
- OperationGt - Class in operation
-
Class representing the operation "Greater than" : >
- OperationGt() - Constructor for class operation.OperationGt
-
- OperationGtCPLEX - Class in operation
-
CPLEX version of OperationGt.
- OperationGtCPLEX() - Constructor for class operation.OperationGtCPLEX
-
- OperationLe - Class in operation
-
Class representing the operation "Less or equal to" : <=
- OperationLe() - Constructor for class operation.OperationLe
-
- OperationLeCPLEX - Class in operation
-
CPLEX version of OperationLe.
- OperationLeCPLEX() - Constructor for class operation.OperationLeCPLEX
-
- OperationLt - Class in operation
-
Class representing the operation "Less than" : <
- OperationLt() - Constructor for class operation.OperationLt
-
- OperationLtCPLEX - Class in operation
-
CPLEX version of OperationLt.
- OperationLtCPLEX() - Constructor for class operation.OperationLtCPLEX
-
- OperationNotEq - Class in operation
-
Class representing the operation "Not equal to" : !
- OperationNotEq() - Constructor for class operation.OperationNotEq
-
- OperationNotEqCPLEX - Class in operation
-
CPLEX version of OperationNotEq.
- OperationNotEqCPLEX() - Constructor for class operation.OperationNotEqCPLEX
-
- optionalArgsPanel - Variable in class gui.MainFrame
-
- optionalOptions - Variable in class gui.MainFrame
-
- optionToField - Variable in class gui.MainFrame
-
- Or - Class in interaction
-
This class represents an Or relation.
- Or() - Constructor for class interaction.Or
-
- OrCPLEX - Class in interaction.cplex
-
CPLEX version of an OR relation.
- OrCPLEX() - Constructor for class interaction.cplex.OrCPLEX
-
- outName - Variable in class applications.FlexfluxCompFVA
-
- outName - Variable in class applications.FlexfluxDR
-
- outName - Variable in class applications.FlexfluxFBA
-
- outName - Variable in class applications.FlexfluxFVA
-
- outName - Variable in class applications.FlexfluxKO
-
- outName - Variable in class applications.FlexfluxPareto
-
- outName - Variable in class applications.FlexfluxReac
-
- outName - Variable in class applications.FlexfluxRFBA
-
- outName - Variable in class applications.FlexfluxTwoReacs
-
- overWritesBounds - Variable in class general.Constraint
-
Determines if the constraints must overwrite an existing constraint for
the same entities.