thread

Class ThreadReac

java.lang.Object

java.lang.Thread

thread.ResolveThread

thread.ThreadReac

All Implemented Interfaces:

java.lang.Runnable

public class ThreadReac
extends ResolveThread

Thread to perform an analysis with a varying flux.

Author:

lmarmiesse 18 avr. 2013

Nested Class Summary

Nested classes/interfaces inherited from class java.lang.Thread

java.lang.Thread.State, java.lang.Thread.UncaughtExceptionHandler

Field Summary

Fields

Modifier and Type	Field and Description
private static int	done Number of fluxes already treated.
private java.util.Map<parsebionet.biodata.BioEntity,java.lang.Double>	entities The entity to make vary.
private java.util.Queue<java.lang.Double>	fluxesQueue Contains all fluxes to treat.
private static java.util.concurrent.locks.Lock	lock
private static int	percentage Percentage of the analysis that is completed.
private ReacAnalysisResult	result The result.
private static java.util.Map<java.lang.Double,java.util.List<java.lang.Double>>	shadowPriceGroups Groups of phenotype phases.

Fields inherited from class thread.ResolveThread

bind, constraintsToAdd

Fields inherited from class java.lang.Thread

MAX_PRIORITY, MIN_PRIORITY, NORM_PRIORITY

Constructor Summary

Constructors

Constructor and Description
ThreadReac(Bind b, java.util.Queue<java.lang.Double> fluxesQueue, java.util.Map<parsebionet.biodata.BioEntity,java.lang.Double> entities, ReacAnalysisResult result, Objective obj)

Method Summary

Methods

Modifier and Type	Method and Description
void	run()
void	setShadowPriceGroups()

Methods inherited from class thread.ResolveThread

setConstraintsToAdd

Methods inherited from class java.lang.Thread

activeCount, checkAccess, clone, countStackFrames, currentThread, destroy, dumpStack, enumerate, getAllStackTraces, getContextClassLoader, getDefaultUncaughtExceptionHandler, getId, getName, getPriority, getStackTrace, getState, getThreadGroup, getUncaughtExceptionHandler, holdsLock, interrupt, interrupted, isAlive, isDaemon, isInterrupted, join, join, join, resume, setContextClassLoader, setDaemon, setDefaultUncaughtExceptionHandler, setName, setPriority, setUncaughtExceptionHandler, sleep, sleep, start, stop, stop, suspend, toString, yield

Methods inherited from class java.lang.Object

equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

percentage

private static int percentage

Percentage of the analysis that is completed.

done

private static int done

Number of fluxes already treated.

lock

private static java.util.concurrent.locks.Lock lock

fluxesQueue

private java.util.Queue<java.lang.Double> fluxesQueue

Contains all fluxes to treat.

result

private ReacAnalysisResult result

The result.

shadowPriceGroups

private static java.util.Map<java.lang.Double,java.util.List<java.lang.Double>> shadowPriceGroups

Groups of phenotype phases.

entities

private java.util.Map<parsebionet.biodata.BioEntity,java.lang.Double> entities

The entity to make vary.

Constructor Detail

ThreadReac

public ThreadReac(Bind b,
          java.util.Queue<java.lang.Double> fluxesQueue,
          java.util.Map<parsebionet.biodata.BioEntity,java.lang.Double> entities,
          ReacAnalysisResult result,
          Objective obj)

Method Detail

run

public void run()

Specified by:

run in interface java.lang.Runnable

Overrides:

run in class java.lang.Thread

setShadowPriceGroups

public void setShadowPriceGroups()