interaction

Class Relation

java.lang.Object

interaction.Relation

Direct Known Subclasses:

InversedRelation, RelationWithList, Unique

public abstract class Relation
extends java.lang.Object

Base class for all relations. Relations can be composed of other relations (And, OR), or be the end of a branch (Unique).

Author:

lmarmiesse 7 mars 2013

Field Summary

Fields

Modifier and Type	Field and Description
(package private) java.util.List<Constraint>	constraints Constraints corresponding to the relation.
protected boolean	probabilityRelation

Constructor Summary

Constructors

Constructor and Description
Relation()

Method Summary

Methods

Modifier and Type	Method and Description
java.util.List<Constraint>	createConstraints() Used when interaction are not in the solver
abstract java.util.List<parsebionet.biodata.BioEntity>	getInvolvedEntities()
boolean	isProbabilityRelation()
abstract boolean	isTrue(java.util.Map<parsebionet.biodata.BioEntity,Constraint> simpleConstraints)
protected abstract void	makeConstraints() Creates the constraints corresponding to the relation.
abstract java.lang.Object	runThrough(Bind b) Used when interactions are in the solver.
void	setProbabilityRelation(boolean proba)
abstract java.lang.String	toString()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

probabilityRelation

protected boolean probabilityRelation

constraints

java.util.List<Constraint> constraints

Constraints corresponding to the relation.

Used when interaction are not in the solver

Constructor Detail

Relation

public Relation()

Method Detail

runThrough

public abstract java.lang.Object runThrough(Bind b)

Used when interactions are in the solver.

Parameters:

b - The bind to get the data from.

Returns:

A solver constraint corresponding to the relation.

toString

public abstract java.lang.String toString()

Overrides:

toString in class java.lang.Object

isTrue

public abstract boolean isTrue(java.util.Map<parsebionet.biodata.BioEntity,Constraint> simpleConstraints)

Parameters:

simpleConstraints - Constraints to add before checking the relation.

Returns:

Whether or not the relation is true.

createConstraints

public java.util.List<Constraint> createConstraints()

Used when interaction are not in the solver

Returns:

The constraints corresponding to the relation.

makeConstraints

protected abstract void makeConstraints()

Creates the constraints corresponding to the relation.

isProbabilityRelation

public boolean isProbabilityRelation()

setProbabilityRelation

public void setProbabilityRelation(boolean proba)

getInvolvedEntities

public abstract java.util.List<parsebionet.biodata.BioEntity> getInvolvedEntities()

Returns:

A list of entities concerned by this relation.