analyses.result

Class DRResult

java.lang.Object

analyses.result.AnalysisResult

analyses.result.FVAResult

analyses.result.DRResult

public class DRResult
extends FVAResult

Class representing the result of dead reactions analysis.

Author:

lmarmiesse 8 avr. 2013

Nested Class Summary

Nested classes/interfaces inherited from class analyses.result.FVAResult

FVAResult.MyDocumentListener

Field Summary

Fields inherited from class analyses.result.FVAResult

map, sorter

Constructor Summary

Constructors

Constructor and Description
DRResult(double objValue, Bind b)

Method Summary

Methods

Modifier and Type	Method and Description
void	clean(double minValue) Removes all reaction that are not considered dead.
java.util.List<parsebionet.biodata.BioEntity>	getDeadReactions()
void	plot() Plots the results.
void	writeToFile(java.lang.String path) Writes the results to a file.

Methods inherited from class analyses.result.FVAResult

addLine, getEssentialReactions, getMap, getObjValue, getReactionsPanel, getValuesForEntity, setMax, setMin

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

DRResult

public DRResult(double objValue,
        Bind b)

Method Detail

writeToFile

public void writeToFile(java.lang.String path)

Description copied from class: AnalysisResult

Writes the results to a file.

Overrides:

writeToFile in class FVAResult

Parameters:

path - Path to the file to write the results.

plot

public void plot()

Description copied from class: AnalysisResult

Plots the results.

Overrides:

plot in class FVAResult

getDeadReactions

public java.util.List<parsebionet.biodata.BioEntity> getDeadReactions()

Returns:

The dead reactions.

clean

public void clean(double minValue)

Removes all reaction that are not considered dead.

Parameters:

minValue - The minimal value to consider a reaction dead.