Uses of Class
interaction.InteractionNetwork

Packages that use InteractionNetwork

Package	Description
general
thread

Uses of InteractionNetwork in general

Fields in general declared as InteractionNetwork

Modifier and Type	Field and Description
protected InteractionNetwork	Bind.intNet The interaction network of the problem.

Methods in general that return InteractionNetwork

Modifier and Type	Method and Description
InteractionNetwork	Bind.getInteractionNetwork()

Constructors in general with parameters of type InteractionNetwork

Constructor and Description
Bind(java.util.List<Constraint> constraints, java.util.Map<parsebionet.biodata.BioEntity,Constraint> simpleConstraints, InteractionNetwork intNet, parsebionet.biodata.BioNetwork bioNet, boolean interactionInSolver) Constructor used to copy the bind.
CplexBind(java.util.List<Constraint> constraints, java.util.Map<parsebionet.biodata.BioEntity,Constraint> simpleConstraints, InteractionNetwork intNet, parsebionet.biodata.BioNetwork bioNet, boolean interactionInSolver)
GLPKBind(java.util.List<Constraint> constraints, java.util.Map<parsebionet.biodata.BioEntity,Constraint> simpleConstraints, InteractionNetwork intNet, parsebionet.biodata.BioNetwork bioNet, boolean interactionInSolver)

Uses of InteractionNetwork in thread

Fields in thread declared as InteractionNetwork

Modifier and Type	Field and Description
protected InteractionNetwork	ThreadFactory.intNet Bind interaction network to copy.

Constructors in thread with parameters of type InteractionNetwork

Constructor and Description
ThreadFactory(java.util.List<Constraint> constraints, java.util.Map<parsebionet.biodata.BioEntity,Constraint> simpleConstraints, InteractionNetwork intNet)
ThreadFactoryCPLEX(java.util.List<Constraint> constraints, java.util.Map<parsebionet.biodata.BioEntity,Constraint> simpleConstraints, InteractionNetwork intNet)
ThreadFactoryGLPK(java.util.List<Constraint> constraints, java.util.Map<parsebionet.biodata.BioEntity,Constraint> simpleConstraints, InteractionNetwork intNet)