Uses of Class
interaction.Interaction

Packages that use Interaction

Package	Description
general
interaction
interaction.cplex

Uses of Interaction in general

Fields in general with type parameters of type Interaction

Modifier and Type	Field and Description
protected java.util.Map<Interaction,java.util.List<Constraint>>	Bind.intToConstraint Links an interactions to a list of constraints to check if the interaction is true.

Methods in general that return types with arguments of type Interaction

Modifier and Type	Method and Description
java.util.Map<Constraint,Interaction>	Bind.checkInteractions() Checks all interactions.
java.util.Map<Interaction,java.util.List<Constraint>>	Bind.getIntToConstraint()

Method parameters in general with type arguments of type Interaction

Modifier and Type	Method and Description
protected void	CplexBind.interactionsToSolverConstraints(java.util.List<Interaction> interactions)
protected void	GLPKBind.interactionsToSolverConstraints(java.util.List<Interaction> interactions) Not used.
protected abstract void	Bind.interactionsToSolverConstraints(java.util.List<Interaction> interactions) Transforms problem interactions into solver constraints.

Uses of Interaction in interaction

Subclasses of Interaction in interaction

Modifier and Type	Class and Description
class	EqInteraction Class representing Eq interactions.
class	IfThenInteraction Class representing ifThen interactions.

Fields in interaction with type parameters of type Interaction

Modifier and Type	Field and Description
private java.util.List<Interaction>	InteractionNetwork.addedInteractions List of interation added in the interaction file.
private java.util.List<Interaction>	InteractionNetwork.GPRInteractions List of GPR interactions.
protected java.util.Map<parsebionet.biodata.BioEntity,java.util.List<Interaction>>	InteractionNetwork.interactionsToCheck

Methods in interaction that return types with arguments of type Interaction

Modifier and Type	Method and Description
java.util.List<Interaction>	InteractionNetwork.getAddedInteractions()
java.util.List<Interaction>	InteractionNetwork.getGPRInteractions()
java.util.Map<parsebionet.biodata.BioEntity,java.util.List<Interaction>>	InteractionNetwork.getInteractionToCheck()

Methods in interaction with parameters of type Interaction

Modifier and Type	Method and Description
void	InteractionNetwork.addAddedIntercation(Interaction i)
void	InteractionNetwork.addGPRIntercation(Interaction i)
void	InteractionNetwork.addInteractionToCheck(Interaction i)

Uses of Interaction in interaction.cplex

Subclasses of Interaction in interaction.cplex

Modifier and Type	Class and Description
class	EqInteractionCplex CPLEX version of the EqInteraction.
class	IfThenInteractionCplex CPLEX version of the IfTheninteraction.