analyses

Class RFBAAnalysis

java.lang.Object

analyses.Analysis

analyses.RFBAAnalysis

public class RFBAAnalysis
extends Analysis

Class to run a time dependent FBA.

Author:

lmarmiesse 5 avr. 2013

Field Summary

Fields

Modifier and Type	Field and Description
(package private) java.lang.String	biomassReac Name of the biomass reaction of the network.
protected double	deltaT Time between each step.
protected double	initX
protected int	iterations Number of iterations.
protected java.util.List<java.lang.String>	toPlot List of entities names to plot.
protected double	X Cell density.

Fields inherited from class analyses.Analysis

b

Constructor Summary

Constructors

Constructor and Description
RFBAAnalysis(Bind b, java.lang.String biomassReac, double X, double deltaT, int iterations, java.util.List<java.lang.String> toPlot)

Method Summary

Methods

Modifier and Type	Method and Description
RFBAResult	runAnalysis() Runs the analysis.
java.lang.String	timeToString(double time)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

X

protected double X

Cell density.

initX

protected double initX

deltaT

protected double deltaT

Time between each step.

iterations

protected int iterations

Number of iterations.

toPlot

protected java.util.List<java.lang.String> toPlot

List of entities names to plot.

biomassReac

java.lang.String biomassReac

Name of the biomass reaction of the network.

Constructor Detail

RFBAAnalysis

public RFBAAnalysis(Bind b,
            java.lang.String biomassReac,
            double X,
            double deltaT,
            int iterations,
            java.util.List<java.lang.String> toPlot)

Method Detail

runAnalysis

public RFBAResult runAnalysis()

Description copied from class: Analysis

Runs the analysis.

Specified by:

runAnalysis in class Analysis

Returns:

An object containing the result of the analysis.

timeToString

public java.lang.String timeToString(double time)