| |
Input:String | |
Name:TIGRXML |
<?xml version="1.0" encoding="ISO-8859-1"?> <TIGR> <TU> <FEAT_NAME>1197.t00015</FEAT_NAME> <DATE>10-Dec-2004</DATE> <GENE_INFO> <LOCUS>AC148241_15.1</LOCUS> <COM_NAME CURATED="0" IS_PRIMARY="1">Protein kinase; Peptidoglycan-binding LysM; Protein kinase-like; Serine/threonine protein kinase; Tyrosine protein kinase</COM_NAME> <PUB_COMMENT> </PUB_COMMENT> <IS_PSEUDOGENE>0</IS_PSEUDOGENE> <FUNCT_ANNOT_EVIDENCE TYPE="CURATED"/> <DATE>10-Dec-2004</DATE> </GENE_INFO> <COORDSET> <END5>82352</END5> <END3>84348</END3> </COORDSET> <MODEL COMMENT="IMGA|AC148241_15.1 AC148241.21 82352-84348 H EGN_Mt041209 20041210"> <FEAT_NAME>1197.m00015</FEAT_NAME> <DATE>10-Dec-2004</DATE> <COORDSET> <END5>82400</END5> <END3>84172</END3> </COORDSET> <MODEL_ATTRIBUTE> <ATTRIBUTE_TYPE METHOD="MW,molwt_update.dbi"> <ATT_SCORE DESC="Molecular Weight">66343.86</ATT_SCORE> </ATTRIBUTE_TYPE> <ATTRIBUTE_TYPE METHOD="PI,molwt_update.dbi"> <ATT_SCORE DESC="Isoelectric point">8.0067</ATT_SCORE> </ATTRIBUTE_TYPE> <ATTRIBUTE_TYPE METHOD="SP-HMM,signalP-2.0"> <ATT_SCORE DESC="HMM-position">26</ATT_SCORE> <ATT_SCORE DESC="HMM-prediction">Signal peptide</ATT_SCORE> <ATT_SCORE DESC="HMM-SPprob">0.918</ATT_SCORE> <ATT_SCORE DESC="HMM-SAprob">0.007</ATT_SCORE> <ATT_SCORE DESC="HMM-cleavprob">0.605</ATT_SCORE> </ATTRIBUTE_TYPE> <ATTRIBUTE_TYPE METHOD="SP-NN,signalP-2.0"> <ATT_SCORE DESC="NN-position">26</ATT_SCORE> <ATT_SCORE DESC="NN-cleavsite">ANG-KN</ATT_SCORE> <ATT_SCORE DESC="NN-maxY">0.679</ATT_SCORE> <ATT_SCORE DESC="NN-meanS">0.700</ATT_SCORE> </ATTRIBUTE_TYPE> <ATTRIBUTE_TYPE METHOD="targetP,targetP_update.dbi"> <ATT_SCORE DESC="Location">secreted</ATT_SCORE> <ATT_SCORE DESC="c:m:s:o scores">0.083:0.008:0.956:0.036</ATT_SCORE> <ATT_SCORE DESC="RC-value">1</ATT_SCORE> <ATT_SCORE DESC="network:peplen">plant:150</ATT_SCORE> <ATT_SCORE DESC="c:m:s:o cutoffs">0:0:0:0</ATT_SCORE> </ATTRIBUTE_TYPE> <ATTRIBUTE_TYPE METHOD="EGN_Mt041209"> <ATT_SCORE DESC="IMGA gene call evidence class">H</ATT_SCORE> </ATTRIBUTE_TYPE> </MODEL_ATTRIBUTE> <MODEL_EVIDENCE> <EVIDENCE_TYPE> <SEQUENCE_DB_MATCH> <SEARCH_DB DB_NAME="MENS|MtAA" DB_TYPE="Database of peptides predicted from Medicago truncatula EST-Clusters"> <SEQ_ELEMENT ACCESSION="MtD11480_1_AA" DESCRIPTION="spans 30 percent of the exon" FEAT_TYPE="mth2-14m21.151.1:Exon" METHOD="blastx" SCORE="30"> <ASMBL_COORDS> <COORDSET> <END5>82400</END5> <END3>84172</END3> </COORDSET> </ASMBL_COORDS> </SEQ_ELEMENT> </SEARCH_DB> <SEARCH_DB DB_NAME="ProDom" DB_TYPE="Protein Domain database (subset of families with at least two domains)"> <SEQ_ELEMENT ACCESSION="pd:PD000001;sp:O81906:O81906_ARATH" DESCRIPTION="spans 26 percent of the exon" FEAT_TYPE="mth2-14m21.151.1:Exon" METHOD="blastx" SCORE="26"> <ASMBL_COORDS> <COORDSET> <END5>82400</END5> <END3>84172</END3> </COORDSET> </ASMBL_COORDS> </SEQ_ELEMENT> <SEQ_ELEMENT ACCESSION="pd:PD000001;sp:Q9S7D9:Q9S7D9_ARATH" DESCRIPTION="spans 26 percent of the exon" FEAT_TYPE="mth2-14m21.151.1:Exon" METHOD="blastx" SCORE="26"> <ASMBL_COORDS> <COORDSET> <END5>82400</END5> <END3>84172</END3> </COORDSET> </ASMBL_COORDS> </SEQ_ELEMENT> </SEARCH_DB> </SEQUENCE_DB_MATCH> </EVIDENCE_TYPE> </MODEL_EVIDENCE> <EXON> <FEAT_NAME>1197.e00050</FEAT_NAME> <DATE>Dec 10 2004 11:28PM</DATE> <COORDSET> <END5>82352</END5> <END3>84348</END3> </COORDSET> <CDS> <FEAT_NAME>1197.c00050</FEAT_NAME> <DATE>Dec 10 2004 11:28PM</DATE> <COORDSET> <END5>82400</END5> <END3>84172</END3> </COORDSET> </CDS> <UTRS> <LEFT_UTR> <COORDSET> <END5>82352</END5> <END3>82399</END3> </COORDSET> </LEFT_UTR> <RIGHT_UTR> <COORDSET> <END5>84173</END5> <END3>84348</END3> </COORDSET> </RIGHT_UTR> </UTRS> </EXON> <CDS_SEQUENCE>ATGGTTTCTTCCTTTTTTCATACACTCATATTCTTTTCTGCCACCCATATCCTACTTCAATTGCCACAAGCCAATGGAAAAAACTTCTCATGTACTTTGAATTCCTCTCCTTCATGTGACACATATGTTGCATACTTTGCTAACTCTCCAAACTTTTTAACCCTCACAGCCATATCTGATATATTTGACACCAGTCCTCAATCCATTGCAAGAGCAAGCAACATAAAAGATGAAAATATGAACCTCATTCATGGCCAACTTTTGCTTATACCTATAACTTGTGGTTGCAATGGAAATGGAAACTACTCTTTTGCCAATATCTCACACTTAATCAAAGAAAGTGAAAGTTACTATTATCTTTCGACCATTTCGTATCAGAATCTCACTAATTGGCAGACAGTGGAAGATTCAAACCCTAATCTGAATCCATATTTGTTGAAAATAGGCACCAAAATAAACATCCCTTTGTTTTGTAGGTGCCCTTCAAACTATTTTGCAAAAGGGATAGAGTATCTCATTACTTATGTTTGGCAGCCTAATGATAATCTTACACTTGTAGCTTCCAAGCTTGGTGCATCACCAAAGGACATAATCACAGCAAATACAAACAACTTTGGTCAAAACTTCACTGTTGCAATCAACCTTCCAGTTTTTATTCCTGTGAAAAACTTACCAGCTCTTTCTCAATCATACTATTCTTCAAGTGAAAGAAAGAGAATCAATCATTTTTCTATTATAATTTCCATTGGTATATGTCTAGGATGCACTATTCTGATTTCACTATTATTATTACTTTTTTATGTTTATTGTTTAAGGAAGAGAAAGGCTTGTGAGAATAAGTGTGTGCCTTCTGTGGAGATAACAGATAAGTTAATTTCCGAAGTTTCAAATTATGTAAGTAAGCCAACAGTGTATGAAGTTGGTATGATTATGAAAGCTACCATGAACCTTAATGAAATGTGTAAGATAGGGAAATCAGTGTACAAAGCTAAAATAGATGGTTTGGTTTTGGCTGTGAAAAATGTAAAGGGACATATCACAGTCACAGAAGAGTTGATGATTTTACAAAAGGTAAATCATGCAAATCTAGTGAAACTAGTAGGTGTCTCTTCAGGATATGATGGAAATCACTTTCTTGTATATGAATATGCTGAAAATGGATCTCTTTATAACTGGTTATTATCTGAGTTTTGCACTCTTAGTTGGAGTCAGAGGTTAAGCATAGCAGTTGATATTGCAATAGGGCTGCAATACTTGCATGAACACACACAACCATGTATAGTCCATAGGAACATCAAATCAAGTAACATTCTTCTTGACTCAAAATTTAAGGCCAAGATAGCAAATTTTTCTGTTGCAAGAACTACAAAGAATCCTATGATAACAAAAGTTGATGTTTTAGGTTATGGAATGGTTCTGATGGAGCTAATAACAGGAAAGAAGTTTTTGTCGTATAGCGAACATAGCGAGGTGAATATGTTGTGGAAAGATTTTAAGTGTGTGTTTGATACAGAACAAAAGAGAGAAGAAATTGTTAGAAGATGGATGGATCCTAAGTTAGGGAGGTTTTATAATGTTGTTGAAGCTCTTAGTTTATTCACTTTGGCAGTGAATTGCATAGAAGAACAACCTTTGTTAAGACCAACTATGGGAGAAGTTGTTCTTAGTCTTTCTCTTCTCACTCAACCCTCTCCTACTTTGTTAGAGGTGTCTTGGACTTATGGATTAGATGTAGAGGTTGCTGAAATGGTTACTCCCATCATAGCTCGTTGA</CDS_SEQUENCE> <PROTEIN_SEQUENCE>MVSSFFHTLIFFSATHILLQLPQANGKNFSCTLNSSPSCDTYVAYFANSPNFLTLTAISDIFDTSPQSIARASNIKDENMNLIHGQLLLIPITCGCNGNGNYSFANISHLIKESESYYYLSTISYQNLTNWQTVEDSNPNLNPYLLKIGTKINIPLFCRCPSNYFAKGIEYLITYVWQPNDNLTLVASKLGASPKDIITANTNNFGQNFTVAINLPVFIPVKNLPALSQSYYSSSERKRINHFSIIISIGICLGCTILISLLLLLFYVYCLRKRKACENKCVPSVEITDKLISEVSNYVSKPTVYEVGMIMKATMNLNEMCKIGKSVYKAKIDGLVLAVKNVKGHITVTEELMILQKVNHANLVKLVGVSSGYDGNHFLVYEYAENGSLYNWLLSEFCTLSWSQRLSIAVDIAIGLQYLHEHTQPCIVHRNIKSSNILLDSKFKAKIANFSVARTTKNPMITKVDVLGYGMVLMELITGKKFLSYSEHSEVNMLWKDFKCVFDTEQKREEIVRRWMDPKLGRFYNVVEALSLFTLAVNCIEEQPLLRPTMGEVVLSLSLLTQPSPTLLEVSWTYGLDVEVAEMVTPIIAR</PROTEIN_SEQUENCE> </MODEL> <TRANSCRIPT_SEQUENCE>TCTTCCCTTGTGCCTTTCATTTGTTCACCACCTTTAATTTTGACAACAATGGTTTCTTCCTTTTTTCATACACTCATATTCTTTTCTGCCACCCATATCCTACTTCAATTGCCACAAGCCAATGGAAAAAACTTCTCATGTACTTTGAATTCCTCTCCTTCATGTGACACATATGTTGCATACTTTGCTAACTCTCCAAACTTTTTAACCCTCACAGCCATATCTGATATATTTGACACCAGTCCTCAATCCATTGCAAGAGCAAGCAACATAAAAGATGAAAATATGAACCTCATTCATGGCCAACTTTTGCTTATACCTATAACTTGTGGTTGCAATGGAAATGGAAACTACTCTTTTGCCAATATCTCACACTTAATCAAAGAAAGTGAAAGTTACTATTATCTTTCGACCATTTCGTATCAGAATCTCACTAATTGGCAGACAGTGGAAGATTCAAACCCTAATCTGAATCCATATTTGTTGAAAATAGGCACCAAAATAAACATCCCTTTGTTTTGTAGGTGCCCTTCAAACTATTTTGCAAAAGGGATAGAGTATCTCATTACTTATGTTTGGCAGCCTAATGATAATCTTACACTTGTAGCTTCCAAGCTTGGTGCATCACCAAAGGACATAATCACAGCAAATACAAACAACTTTGGTCAAAACTTCACTGTTGCAATCAACCTTCCAGTTTTTATTCCTGTGAAAAACTTACCAGCTCTTTCTCAATCATACTATTCTTCAAGTGAAAGAAAGAGAATCAATCATTTTTCTATTATAATTTCCATTGGTATATGTCTAGGATGCACTATTCTGATTTCACTATTATTATTACTTTTTTATGTTTATTGTTTAAGGAAGAGAAAGGCTTGTGAGAATAAGTGTGTGCCTTCTGTGGAGATAACAGATAAGTTAATTTCCGAAGTTTCAAATTATGTAAGTAAGCCAACAGTGTATGAAGTTGGTATGATTATGAAAGCTACCATGAACCTTAATGAAATGTGTAAGATAGGGAAATCAGTGTACAAAGCTAAAATAGATGGTTTGGTTTTGGCTGTGAAAAATGTAAAGGGACATATCACAGTCACAGAAGAGTTGATGATTTTACAAAAGGTAAATCATGCAAATCTAGTGAAACTAGTAGGTGTCTCTTCAGGATATGATGGAAATCACTTTCTTGTATATGAATATGCTGAAAATGGATCTCTTTATAACTGGTTATTATCTGAGTTTTGCACTCTTAGTTGGAGTCAGAGGTTAAGCATAGCAGTTGATATTGCAATAGGGCTGCAATACTTGCATGAACACACACAACCATGTATAGTCCATAGGAACATCAAATCAAGTAACATTCTTCTTGACTCAAAATTTAAGGCCAAGATAGCAAATTTTTCTGTTGCAAGAACTACAAAGAATCCTATGATAACAAAAGTTGATGTTTTAGGTTATGGAATGGTTCTGATGGAGCTAATAACAGGAAAGAAGTTTTTGTCGTATAGCGAACATAGCGAGGTGAATATGTTGTGGAAAGATTTTAAGTGTGTGTTTGATACAGAACAAAAGAGAGAAGAAATTGTTAGAAGATGGATGGATCCTAAGTTAGGGAGGTTTTATAATGTTGTTGAAGCTCTTAGTTTATTCACTTTGGCAGTGAATTGCATAGAAGAACAACCTTTGTTAAGACCAACTATGGGAGAAGTTGTTCTTAGTCTTTCTCTTCTCACTCAACCCTCTCCTACTTTGTTAGAGGTGTCTTGGACTTATGGATTAGATGTAGAGGTTGCTGAAATGGTTACTCCCATCATAGCTCGTTGATTGAGGGAATGCAAATTCAGTAATTGAATTAAAAATTTGGTATTTTGTTTTTTTTAACAAGAAATTTGGTATATTGTTGATGCTTTCCTTAGTATATTAGTAACAATCTCATGTGTCCTCGTGACCTTAACTCAGTTGGTATGGACAATTCATAATATATGTAAGGTCTGGGGTTC</TRANSCRIPT_SEQUENCE> </TU> </TIGR> |