| |
Input:String | |
Name:TIGRXML |
<?xml version='1.0' encoding='ISO-8859-1'?> <TIGR> <TU> <FEAT_NAME>752.t00011</FEAT_NAME> <DATE>10-Dec-2004</DATE> <GENE_INFO> <LOCUS>AC123570_11.1</LOCUS> <COM_NAME CURATED="0" IS_PRIMARY="1">LysM domain-containing receptor-like kinase 7-related</COM_NAME> <PUB_COMMENT> </PUB_COMMENT> <IS_PSEUDOGENE>0</IS_PSEUDOGENE> <FUNCT_ANNOT_EVIDENCE TYPE="AUTO"> <ASSIGN_ACC ASSIGN_METHOD="autoBYOB">GB:AAQ73158.1:LysM domain-containing receptor-like kinase 7</ASSIGN_ACC> </FUNCT_ANNOT_EVIDENCE> <DATE>10-Dec-2004</DATE> </GENE_INFO> <COORDSET> <END5>58451</END5> <END3>60220</END3> </COORDSET> <MODEL COMMENT="IMGA|AC123570_11.1 AC123570.7 58451-60220 F EGN_Mt041209 20041210"> <FEAT_NAME>752.m00011</FEAT_NAME> <CDNA_SUPPORT> <ACCESSION>spans 100 percent of the model length</ACCESSION> <ACCESSION ANNOT_INCORP="1" DBXREF="MtGI|TC82240" IS_FLI="1" UNIQUE_TO_ISOFORM="1">cDNA support spans 100 percent of the model</ACCESSION> <ACCESSION ANNOT_INCORP="1" DBXREF="MENS|MtD20053_GC" IS_FLI="0" UNIQUE_TO_ISOFORM="1">cDNA support spans 21 percent of the model</ACCESSION> </CDNA_SUPPORT> <DATE>10-Dec-2004</DATE> <COORDSET> <END5>58484</END5> <END3>60079</END3> </COORDSET> <MODEL_ATTRIBUTE> <ATTRIBUTE_TYPE METHOD="MW,molwt_update.dbi"> <ATT_SCORE DESC="Molecular Weight">25403.37</ATT_SCORE> </ATTRIBUTE_TYPE> <ATTRIBUTE_TYPE METHOD="PI,molwt_update.dbi"> <ATT_SCORE DESC="Isoelectric point">4.6579</ATT_SCORE> </ATTRIBUTE_TYPE> <ATTRIBUTE_TYPE METHOD="SP-HMM,signalP-2.0"> <ATT_SCORE DESC="HMM-position">26</ATT_SCORE> <ATT_SCORE DESC="HMM-prediction">Signal peptide</ATT_SCORE> <ATT_SCORE DESC="HMM-SPprob">0.976</ATT_SCORE> <ATT_SCORE DESC="HMM-SAprob">0.000</ATT_SCORE> <ATT_SCORE DESC="HMM-cleavprob">0.221</ATT_SCORE> </ATTRIBUTE_TYPE> <ATTRIBUTE_TYPE METHOD="SP-NN,signalP-2.0"> <ATT_SCORE DESC="NN-position">24</ATT_SCORE> <ATT_SCORE DESC="NN-cleavsite">AES-KC</ATT_SCORE> <ATT_SCORE DESC="NN-maxY">0.505</ATT_SCORE> <ATT_SCORE DESC="NN-meanS">0.849</ATT_SCORE> </ATTRIBUTE_TYPE> <ATTRIBUTE_TYPE METHOD="targetP,targetP_update.dbi"> <ATT_SCORE DESC="Location">secreted</ATT_SCORE> <ATT_SCORE DESC="c:m:s:o scores">0.005:0.093:0.976:0.026</ATT_SCORE> <ATT_SCORE DESC="RC-value">1</ATT_SCORE> <ATT_SCORE DESC="network:peplen">plant:150</ATT_SCORE> <ATT_SCORE DESC="c:m:s:o cutoffs">0:0:0:0</ATT_SCORE> </ATTRIBUTE_TYPE> <ATTRIBUTE_TYPE METHOD="EGN_Mt041209"> <ATT_SCORE DESC="IMGA gene call evidence class">F</ATT_SCORE> </ATTRIBUTE_TYPE> </MODEL_ATTRIBUTE> <MODEL_EVIDENCE> <EVIDENCE_TYPE> <SEQUENCE_DB_MATCH> <SEARCH_DB DB_NAME="MENS|MtAA" DB_TYPE="Database of peptides predicted from Medicago truncatula EST-Clusters"> <SEQ_ELEMENT ACCESSION="MtD04912_1_AA" DESCRIPTION="spans 99 percent of the exon" FEAT_TYPE="mth2-33l22.111.1:Exon" METHOD="blastx" SCORE="99"> <ASMBL_COORDS> <COORDSET> <END5>58484</END5> <END3>59117</END3> </COORDSET> </ASMBL_COORDS> </SEQ_ELEMENT> </SEARCH_DB> <SEARCH_DB DB_NAME="ProDom" DB_TYPE="Protein Domain database (subset of families with at least two domains)"> <SEQ_ELEMENT ACCESSION="pd:PD023767;sp:Q9LVE3:Q9LVE3_ARATH" DESCRIPTION="spans 47 percent of the exon" FEAT_TYPE="mth2-33l22.111.1:Exon" METHOD="blastx" SCORE="47"> <ASMBL_COORDS> <COORDSET> <END5>58484</END5> <END3>59117</END3> </COORDSET> </ASMBL_COORDS> </SEQ_ELEMENT> </SEARCH_DB> </SEQUENCE_DB_MATCH> </EVIDENCE_TYPE> </MODEL_EVIDENCE> <EXON> <FEAT_NAME>752.e00039</FEAT_NAME> <DATE>Dec 10 2004 4:00PM</DATE> <COORDSET> <END5>58451</END5> <END3>59117</END3> </COORDSET> <CDS> <FEAT_NAME>752.c00039</FEAT_NAME> <DATE>Dec 10 2004 4:00PM</DATE> <COORDSET> <END5>58484</END5> <END3>59117</END3> </COORDSET> </CDS> <UTRS> <LEFT_UTR> <COORDSET> <END5>58451</END5> <END3>58483</END3> </COORDSET> </LEFT_UTR> </UTRS> </EXON> <EXON> <FEAT_NAME>752.e00040</FEAT_NAME> <DATE>Dec 10 2004 4:00PM</DATE> <COORDSET> <END5>59936</END5> <END3>59969</END3> </COORDSET> <CDS> <FEAT_NAME>752.c00040</FEAT_NAME> <DATE>Dec 10 2004 4:00PM</DATE> <COORDSET> <END5>59936</END5> <END3>59969</END3> </COORDSET> </CDS> </EXON> <EXON> <FEAT_NAME>752.e00041</FEAT_NAME> <DATE>Dec 10 2004 4:00PM</DATE> <COORDSET> <END5>60067</END5> <END3>60220</END3> </COORDSET> <CDS> <FEAT_NAME>752.c00041</FEAT_NAME> <DATE>Dec 10 2004 4:00PM</DATE> <COORDSET> <END5>60067</END5> <END3>60079</END3> </COORDSET> </CDS> <UTRS> <RIGHT_UTR> <COORDSET> <END5>60080</END5> <END3>60220</END3> </COORDSET> </RIGHT_UTR> </UTRS> </EXON> <CDS_SEQUENCE>ATGAAACCAATCAAATTCAGATTATCATTTTTATTCATGTTACTAGCCTCTAAATCCTTCATAGCAGAATCAAAATGTAGCAAAACTTGTAATATAGCGTTAGCTTCCTATTATCTACAAGATGATACAAATCTCACATATGTTTCAAACATCATGCAATCAAACCTTGTTACAAAACCAGAAGATATTGTTAGTTACAACACAGACACAATAACAAACAAAGATTTTGTCCAATCTTTTACAAGAGTGAATGTTCCATTCCCTTGTGATTGCATCCATGATGAGTTTCTTGGCCATATATTTCAATACCAAGTTGCTACAAAAGATACTTATTTATCTGTTGCTAGTAACAATTATTCCAATTTGACTACTTCTGAATGGTTGCAAAATTTCAATAGCTATCCATCAAATGATATTCCTGATACTGGAACTCTTAATGTTACTGTTAATTGTTCATGTGGGAACAGTGATGTTTCCAAGGATTATGGTTTGTTTATTACATATCCTCTTAGACCTGAGGATTCTTTGGAATTGATTTCTAATAAGACTGAAATTGATGCTGAGTTGCTGCAAAAGTATAACCCTGGTGTGAATTTTAGTCAAGGGAGTGGTTTGGTTTATATTCCTGGGAAAGACCAAAATCGTAACTATGTGCCTTTTCACACTAGCACTGGAGGTTAG</CDS_SEQUENCE> <PROTEIN_SEQUENCE>MKPIKFRLSFLFMLLASKSFIAESKCSKTCNIALASYYLQDDTNLTYVSNIMQSNLVTKPEDIVSYNTDTITNKDFVQSFTRVNVPFPCDCIHDEFLGHIFQYQVATKDTYLSVASNNYSNLTTSEWLQNFNSYPSNDIPDTGTLNVTVNCSCGNSDVSKDYGLFITYPLRPEDSLELISNKTEIDAELLQKYNPGVNFSQGSGLVYIPGKDQNRNYVPFHTSTGG</PROTEIN_SEQUENCE> </MODEL> <TRANSCRIPT_SEQUENCE>TTCTTATCCTATGTTCCTATTATACTGTACACAATGAAACCAATCAAATTCAGATTATCATTTTTATTCATGTTACTAGCCTCTAAATCCTTCATAGCAGAATCAAAATGTAGCAAAACTTGTAATATAGCGTTAGCTTCCTATTATCTACAAGATGATACAAATCTCACATATGTTTCAAACATCATGCAATCAAACCTTGTTACAAAACCAGAAGATATTGTTAGTTACAACACAGACACAATAACAAACAAAGATTTTGTCCAATCTTTTACAAGAGTGAATGTTCCATTCCCTTGTGATTGCATCCATGATGAGTTTCTTGGCCATATATTTCAATACCAAGTTGCTACAAAAGATACTTATTTATCTGTTGCTAGTAACAATTATTCCAATTTGACTACTTCTGAATGGTTGCAAAATTTCAATAGCTATCCATCAAATGATATTCCTGATACTGGAACTCTTAATGTTACTGTTAATTGTTCATGTGGGAACAGTGATGTTTCCAAGGATTATGGTTTGTTTATTACATATCCTCTTAGACCTGAGGATTCTTTGGAATTGATTTCTAATAAGACTGAAATTGATGCTGAGTTGCTGCAAAAGTATAACCCTGGTGTGAATTTTAGTCAAGGGAGTGGTTTGGTTTATATTCCTGGGAAAGGTACTTTCTTATTTTTGCTTCTATATATGTTTTGGTCTTTTGATATCAATTCATGATGTTTTTGTACATACTGTGAGATTGATTTTCTTATAGTATGTATTAAATTGGTTAAAGGGTAATAGGTATTTGCTATTTTACTTTTGATTTTTGTGAATTTATATAGAATCATGGTTTTTTTTGTACCAAAAAAAAAAAAAAAGAATCATGGTTTTTGAAAAGGACAAAACTTAAGTGTATTTTTATAGGTGCTTTTCGTAGTATTCTTCACTTAGCATACAATTTCTGTGGTTATAACAAACTTAGAGAAAGTTATAGATTGGAGGAAATCATTGGCAGTTACGAACATTTTAAGTGAAGAACACGAAAAGCACCTAACCTAAGTTTTGAAATGTCCAGAATCACAATTTGAGCCATTACATCACAGTTTTTTTATGTCTTTCCGACTGAAATATGGCCATCATTGAGGTCACATTTGATCGTGATTCTCTAGAAAATCAATGATAACCTTGAATAGGAATAAAAAGTAGACTATCCCAGATAAATGAGAAATCTTGATTTTTGTTTATTTCTCTTAAACTTAAGCTTCCTAATTGCTTGTTTTGGCTATAAATCTTAGTATGGAGAAATGCTAATGATTTCTAATAATCTGATTAGTACTGCATTCAAAGTGTTTACATGATAAGAAATGCATTGAAGGTGTGTGTAACTTTTTAGCATTATGCTGCTTATAGTTGTGTGCCTGTATCTTCAACTTCATTATGGAGATCTATAAGCTTTGAAACATTATCCTCACATTTGATTTTCTATTCAATTTCCAGACCAAAATCGTAACTATGTGCCTTTTCACACTAGGTAATTCCCTTTTTGCTTTGCACATGAAGTTAAATAATTTTTCATACTCTTAATAACATGCTAATCTTGATGGCCTTGTTTTCATTTTCATTTTCAGCACTGGAGGTTAGTTTCAACCTTCAAACTACACAAAAAGTTGAATTGTTGATTATTGTTATACTCGAGTTTGGCATTCATATCAGATGCAAGGTAAAAATATCCTTAAAGTAGAACTCTAATCTACTTCCATCTCATATTACATATATTTTTGT</TRANSCRIPT_SEQUENCE> </TU> </TIGR> |
| |
Input:String | |
Name:TIGRXML |
<?xml version='1.0' encoding='ISO-8859-1'?> <TIGR> <TU> <FEAT_NAME>752.t00014</FEAT_NAME> <DATE>10-Dec-2004</DATE> <GENE_INFO> <LOCUS>AC123570_14.1</LOCUS> <COM_NAME CURATED="0" IS_PRIMARY="1">LysM domain-containing receptor-like kinase 6-related</COM_NAME> <PUB_COMMENT> </PUB_COMMENT> <IS_PSEUDOGENE>0</IS_PSEUDOGENE> <FUNCT_ANNOT_EVIDENCE TYPE="AUTO"> <ASSIGN_ACC ASSIGN_METHOD="autoBYOB">GB:AAQ73157.1:LysM domain-containing receptor-like kinase 6</ASSIGN_ACC> </FUNCT_ANNOT_EVIDENCE> <DATE>10-Dec-2004</DATE> </GENE_INFO> <COORDSET> <END5>63405</END5> <END3>65383</END3> </COORDSET> <MODEL COMMENT="IMGA|AC123570_14.1 AC123570.7 63405-65383 E EGN_Mt041209 20041210"> <FEAT_NAME>752.m00014</FEAT_NAME> <CDNA_SUPPORT> <ACCESSION>spans 18 percent of the model length</ACCESSION> <ACCESSION ANNOT_INCORP="1" DBXREF="MENS|MtD08014_GC" IS_FLI="0" UNIQUE_TO_ISOFORM="1">cDNA support spans 18 percent of the model</ACCESSION> <ACCESSION ANNOT_INCORP="1" DBXREF="MtEST|BG448539" IS_FLI="0" UNIQUE_TO_ISOFORM="1">cDNA support spans 18 percent of the model</ACCESSION> </CDNA_SUPPORT> <DATE>10-Dec-2004</DATE> <COORDSET> <END5>63504</END5> <END3>65201</END3> </COORDSET> <MODEL_ATTRIBUTE> <ATTRIBUTE_TYPE METHOD="MW,molwt_update.dbi"> <ATT_SCORE DESC="Molecular Weight">27758.95</ATT_SCORE> </ATTRIBUTE_TYPE> <ATTRIBUTE_TYPE METHOD="PI,molwt_update.dbi"> <ATT_SCORE DESC="Isoelectric point">7.2052</ATT_SCORE> </ATTRIBUTE_TYPE> <ATTRIBUTE_TYPE METHOD="SP-HMM,signalP-2.0"> <ATT_SCORE DESC="HMM-position">19</ATT_SCORE> <ATT_SCORE DESC="HMM-prediction">Signal peptide</ATT_SCORE> <ATT_SCORE DESC="HMM-SPprob">0.999</ATT_SCORE> <ATT_SCORE DESC="HMM-SAprob">0.000</ATT_SCORE> <ATT_SCORE DESC="HMM-cleavprob">0.716</ATT_SCORE> </ATTRIBUTE_TYPE> <ATTRIBUTE_TYPE METHOD="SP-NN,signalP-2.0"> <ATT_SCORE DESC="NN-position">19</ATT_SCORE> <ATT_SCORE DESC="NN-cleavsite">TES-KC</ATT_SCORE> <ATT_SCORE DESC="NN-maxY">0.865</ATT_SCORE> <ATT_SCORE DESC="NN-meanS">0.895</ATT_SCORE> </ATTRIBUTE_TYPE> <ATTRIBUTE_TYPE METHOD="targetP,targetP_update.dbi"> <ATT_SCORE DESC="Location">secreted</ATT_SCORE> <ATT_SCORE DESC="c:m:s:o scores">0.060:0.011:0.937:0.040</ATT_SCORE> <ATT_SCORE DESC="RC-value">1</ATT_SCORE> <ATT_SCORE DESC="network:peplen">plant:150</ATT_SCORE> <ATT_SCORE DESC="c:m:s:o cutoffs">0:0:0:0</ATT_SCORE> </ATTRIBUTE_TYPE> <ATTRIBUTE_TYPE METHOD="EGN_Mt041209"> <ATT_SCORE DESC="IMGA gene call evidence class">E</ATT_SCORE> </ATTRIBUTE_TYPE> </MODEL_ATTRIBUTE> <MODEL_EVIDENCE> <EVIDENCE_TYPE> <SEQUENCE_DB_MATCH> <SEARCH_DB DB_NAME="MENS|MtAA" DB_TYPE="Database of peptides predicted from Medicago truncatula EST-Clusters"> <SEQ_ELEMENT ACCESSION="MtD04912_1_AA" DESCRIPTION="spans 91 percent of the exon" FEAT_TYPE="mth2-33l22.141.1:Exon" METHOD="blastx" SCORE="91"> <ASMBL_COORDS> <COORDSET> <END5>63504</END5> <END3>64092</END3> </COORDSET> </ASMBL_COORDS> </SEQ_ELEMENT> <SEQ_ELEMENT ACCESSION="MtD06512_1_AA" DESCRIPTION="spans 91 percent of the exon" FEAT_TYPE="mth2-33l22.141.1:Exon" METHOD="blastx" SCORE="91"> <ASMBL_COORDS> <COORDSET> <END5>63504</END5> <END3>64092</END3> </COORDSET> </ASMBL_COORDS> </SEQ_ELEMENT> <SEQ_ELEMENT ACCESSION="MtD07324_1_AA" DESCRIPTION="spans 91 percent of the exon" FEAT_TYPE="mth2-33l22.141.1:Exon" METHOD="blastx" SCORE="91"> <ASMBL_COORDS> <COORDSET> <END5>63504</END5> <END3>64092</END3> </COORDSET> </ASMBL_COORDS> </SEQ_ELEMENT> </SEARCH_DB> <SEARCH_DB DB_NAME="ProDom" DB_TYPE="Protein Domain database (subset of families with at least two domains)"> <SEQ_ELEMENT ACCESSION="pd:PD023767;sp:Q9LVE3:Q9LVE3_ARATH" DESCRIPTION="spans 51 percent of the exon" FEAT_TYPE="mth2-33l22.141.1:Exon" METHOD="blastx" SCORE="51"> <ASMBL_COORDS> <COORDSET> <END5>63504</END5> <END3>64092</END3> </COORDSET> </ASMBL_COORDS> </SEQ_ELEMENT> </SEARCH_DB> </SEQUENCE_DB_MATCH> </EVIDENCE_TYPE> </MODEL_EVIDENCE> <EXON> <FEAT_NAME>752.e00050</FEAT_NAME> <DATE>Dec 10 2004 4:00PM</DATE> <COORDSET> <END5>63405</END5> <END3>64092</END3> </COORDSET> <CDS> <FEAT_NAME>752.c00050</FEAT_NAME> <DATE>Dec 10 2004 4:00PM</DATE> <COORDSET> <END5>63504</END5> <END3>64092</END3> </COORDSET> </CDS> <UTRS> <LEFT_UTR> <COORDSET> <END5>63405</END5> <END3>63503</END3> </COORDSET> </LEFT_UTR> </UTRS> </EXON> <EXON> <FEAT_NAME>752.e00051</FEAT_NAME> <DATE>Dec 10 2004 4:00PM</DATE> <COORDSET> <END5>64369</END5> <END3>64423</END3> </COORDSET> <CDS> <FEAT_NAME>752.c00051</FEAT_NAME> <DATE>Dec 10 2004 4:00PM</DATE> <COORDSET> <END5>64369</END5> <END3>64423</END3> </COORDSET> </CDS> </EXON> <EXON> <FEAT_NAME>752.e00052</FEAT_NAME> <DATE>Dec 10 2004 4:00PM</DATE> <COORDSET> <END5>64996</END5> <END3>65029</END3> </COORDSET> <CDS> <FEAT_NAME>752.c00052</FEAT_NAME> <DATE>Dec 10 2004 4:00PM</DATE> <COORDSET> <END5>64996</END5> <END3>65029</END3> </COORDSET> </CDS> </EXON> <EXON> <FEAT_NAME>752.e00053</FEAT_NAME> <DATE>Dec 10 2004 4:00PM</DATE> <COORDSET> <END5>65133</END5> <END3>65383</END3> </COORDSET> <CDS> <FEAT_NAME>752.c00053</FEAT_NAME> <DATE>Dec 10 2004 4:00PM</DATE> <COORDSET> <END5>65133</END5> <END3>65201</END3> </COORDSET> </CDS> <UTRS> <RIGHT_UTR> <COORDSET> <END5>65202</END5> <END3>65383</END3> </COORDSET> </RIGHT_UTR> </UTRS> </EXON> <CDS_SEQUENCE>ATGAAAATCAGTTTCAGTTTCATAGTTCTTATCTTGTTAATAGCTTCAACAGAATCAAAGTGTAACGAAGGTTGTAGTCTAGCTCTAGCGTCATACACCTTAAACCATGTTTCCAACCTTACATATATTTCAAACATTATGAAATCCAATGTTCTTTCAAAACCTCAAGATATCATCATCAACAACGACAAAAACAAAAGGGCGAATGTTCCCTTCCCTTGTAATTGCATCAATGGAGAGTTTCTTGCTTATACATTTCTCTATGAGCTTCAGCCAGGAGAAACATATACATCAGTTGCAGAAGAGAGTTTTTCAAATTTGACTACTGATGTTTGGATGCAAAACTTCAATGTTTATAGACCAACTAATATTCCTGATTTTGCAATGATTAAAGTTACTGTTAATTGTTCTTGTGGGAATAAAGAGGTTTCTATGGATTATGGATTGTTCATCACATATCCACTTAGAAGTGAGGACACTTTGGAGTCTATTGCTAAGGGTGCAGAGATTGAGGCTGAGTTGCTGCAGAGGTACAACCCTGGTGTTAATTTCAGCAAAGGAAGTGGTCTTGTTTTTATTCCAGGGAAAGGCACCACCACTAAGTACCAAAAACTACTATCTCTAATAGTAGCAAAGCGGACGGAATCAAAATGGAAGCTATTTGCCCCTTCACCCGAGCACAGTAGGTTTGATCTCTTACTCCTGCAAAAAGTTGGTAATTTGATTATTGTCTTTGCTGAAGTTTGA</CDS_SEQUENCE> <PROTEIN_SEQUENCE>MKISFSFIVLILLIASTESKCNEGCSLALASYTLNHVSNLTYISNIMKSNVLSKPQDIIINNDKNKRANVPFPCNCINGEFLAYTFLYELQPGETYTSVAEESFSNLTTDVWMQNFNVYRPTNIPDFAMIKVTVNCSCGNKEVSMDYGLFITYPLRSEDTLESIAKGAEIEAELLQRYNPGVNFSKGSGLVFIPGKGTTTKYQKLLSLIVAKRTESKWKLFAPSPEHSRFDLLLLQKVGNLIIVFAEV</PROTEIN_SEQUENCE> </MODEL> <TRANSCRIPT_SEQUENCE>TCTTATCTTCTTTCTTACACTAATTTATTCATTAACACTAACACAAAAACTTCAATTTTCTCTTCTTCTCTTCAAAAACCATTTGTTATATTCAACTCAATGAAAATCAGTTTCAGTTTCATAGTTCTTATCTTGTTAATAGCTTCAACAGAATCAAAGTGTAACGAAGGTTGTAGTCTAGCTCTAGCGTCATACACCTTAAACCATGTTTCCAACCTTACATATATTTCAAACATTATGAAATCCAATGTTCTTTCAAAACCTCAAGATATCATCATCAACAACGACAAAAACAAAAGGGCGAATGTTCCCTTCCCTTGTAATTGCATCAATGGAGAGTTTCTTGCTTATACATTTCTCTATGAGCTTCAGCCAGGAGAAACATATACATCAGTTGCAGAAGAGAGTTTTTCAAATTTGACTACTGATGTTTGGATGCAAAACTTCAATGTTTATAGACCAACTAATATTCCTGATTTTGCAATGATTAAAGTTACTGTTAATTGTTCTTGTGGGAATAAAGAGGTTTCTATGGATTATGGATTGTTCATCACATATCCACTTAGAAGTGAGGACACTTTGGAGTCTATTGCTAAGGGTGCAGAGATTGAGGCTGAGTTGCTGCAGAGGTACAACCCTGGTGTTAATTTCAGCAAAGGAAGTGGTCTTGTTTTTATTCCAGGGAAAGGTTAGTTTTTTAATTTTTCTGTCATGGTTTAATTGATTTCAACTCTATATGGGGATTTTGTACTTTCTGTAAAGTGGGTTTATGAAATAGCACATTAGTACACATTGTTGCTTATTCTGATTTTAGATTTTGTCAATAAGTATATCTAGGACTGAATGTGTTATATTCCATAGATGAAGTTGAGAGAAAGTTAGAAAACTTTTGTATTGATGGTAATGAGTAATATTGCAAATGAGAAAATTGACCTTTTTATGAGGTGATTACATCTATATATAGGCACCACCACTAAGTACCAAAAACTACTATCTCTAATAGTAGCAAAGCGGACGGAGTGAGTAAAGCAAGAGCCCCTGCCCTTTGGGCTTGGTCCATTTGTTAGTTGTGATACAACTAGGAGGGGATAGAGGGTGCGGGGGGCGACAGATTAAGGTAGACCTGTAATCTTGACTACAATAATTAAACAAAGTTTTGTACTATGTAATCGTAACCATTGCATAATAGAAAACTACAATAGACAACAGTCACTCTGCGACTGCAGTCCAAGGTGTAGCACATGCTAGGATAGTTAGAGTTTTGTTATTGTTAGTCAATTTGGAATTAGTTAGGAGTTAGTTACTCAATTAGTTGTGCAGCTGGGTTCTATTAATAACACTAACATTATTGTGTACAAAATTCAATATCTTTTATCAATCTATAATATATGATTCCTTAATGAGCTTTTATCTCAATGTGTATTCCTATGCTCTCTTTCTCTCCTGTGAGTATGATCTATGGCCCTATCATCCCATGATTCTTCACAGCAATCGACCGAACTCTGTAATCAATCTTTGTGTTCTTGTGCGTTTATTTATTTGATTACTTTAGAGTCGGGTTTGCCTCAATTTTCGTCCTTTCACTTTACAGATCAAAATGGAAGCTATTTGCCCCTTCACCCGAGGTATAAATTCTATACTTATTCTCCATGTTAATTTACATCAAGTTTTAATTTTTTTGACATTATCTGAAAAAACATTATAATAAATTTTCATTTTCTTTTGCAGCACAGTAGGTTTGATCTCTTACTCCTGCAAAAAGTTGGTAATTTGATTATTGTCTTTGCTGAAGTTTGATATCAATGTCTATATCTAAGCCAAGGTAAAGATATCGTCAAAGTTATAATGCCAATGTTATTTCATCTCATGTATTATAGTTTCTACATGAGCAGGTCTAGGAACTGTGGCTATTACTGGAATATCTGTTGGAGTACTAGCAGCGCTTTTACTATTGTTATTTTTTGTGTATATTAAATATT</TRANSCRIPT_SEQUENCE> </TU> </TIGR> |
| |
Input:String | |
Name:TIGRXML |
<?xml version='1.0' encoding='ISO-8859-1'?> <TIGR> <TU> <FEAT_NAME>1232.t00017</FEAT_NAME> <DATE>10-Dec-2004</DATE> <GENE_INFO> <LOCUS>AC148994_17.1</LOCUS> <COM_NAME CURATED="0" IS_PRIMARY="1">Protein kinase; Peptidoglycan-binding LysM; Serine/threonine protein kinase; Tyrosine protein kinase; Serine/threonine protein kinase, active site; Protein kinase-like</COM_NAME> <PUB_COMMENT> </PUB_COMMENT> <IS_PSEUDOGENE>0</IS_PSEUDOGENE> <FUNCT_ANNOT_EVIDENCE TYPE="CURATED"/> <DATE>10-Dec-2004</DATE> </GENE_INFO> <COORDSET> <END5>80758</END5> <END3>77688</END3> </COORDSET> <MODEL COMMENT="IMGA|AC148994_17.1 AC148994.3 80758-77688 E EGN_Mt041209 20041210"> <FEAT_NAME>1232.m00017</FEAT_NAME> <CDNA_SUPPORT> <ACCESSION>spans 66 percent of the model length</ACCESSION> <ACCESSION ANNOT_INCORP="1" DBXREF="MtGI|TC90668" IS_FLI="0" UNIQUE_TO_ISOFORM="1">cDNA support spans 59 percent of the model</ACCESSION> <ACCESSION ANNOT_INCORP="1" DBXREF="MENS|MtC90998_GC" IS_FLI="0" UNIQUE_TO_ISOFORM="1">cDNA support spans 41 percent of the model</ACCESSION> <ACCESSION ANNOT_INCORP="1" DBXREF="MENS|MtC91000_GC" IS_FLI="0" UNIQUE_TO_ISOFORM="1">cDNA support spans 6 percent of the model</ACCESSION> <ACCESSION ANNOT_INCORP="1" DBXREF="MtEST|AL379176" IS_FLI="0" UNIQUE_TO_ISOFORM="1">cDNA support spans 6 percent of the model</ACCESSION> </CDNA_SUPPORT> <DATE>10-Dec-2004</DATE> <COORDSET> <END5>80672</END5> <END3>78043</END3> </COORDSET> <MODEL_ATTRIBUTE> <ATTRIBUTE_TYPE METHOD="MW,molwt_update.dbi"> <ATT_SCORE DESC="Molecular Weight">76072.43</ATT_SCORE> </ATTRIBUTE_TYPE> <ATTRIBUTE_TYPE METHOD="PI,molwt_update.dbi"> <ATT_SCORE DESC="Isoelectric point">7.2003</ATT_SCORE> </ATTRIBUTE_TYPE> <ATTRIBUTE_TYPE METHOD="targetP,targetP_update.dbi"> <ATT_SCORE DESC="Location">secreted</ATT_SCORE> <ATT_SCORE DESC="c:m:s:o scores">0.003:0.014:0.989:0.053</ATT_SCORE> <ATT_SCORE DESC="RC-value">1</ATT_SCORE> <ATT_SCORE DESC="network:peplen">plant:150</ATT_SCORE> <ATT_SCORE DESC="c:m:s:o cutoffs">0:0:0:0</ATT_SCORE> </ATTRIBUTE_TYPE> <ATTRIBUTE_TYPE METHOD="EGN_Mt041209"> <ATT_SCORE DESC="IMGA gene call evidence class">E</ATT_SCORE> </ATTRIBUTE_TYPE> </MODEL_ATTRIBUTE> <MODEL_EVIDENCE> <EVIDENCE_TYPE> <SEQUENCE_DB_MATCH> <SEARCH_DB DB_NAME="MENS|MtAA" DB_TYPE="Database of peptides predicted from Medicago truncatula EST-Clusters"> <SEQ_ELEMENT ACCESSION="MtC50058_1_AA" DESCRIPTION="spans 98 percent of the exon" FEAT_TYPE="mth2-3c7.171.2:Exon" METHOD="blastx" SCORE="98"> <ASMBL_COORDS> <COORDSET> <END5>85697</END5> <END3>84085</END3> </COORDSET> </ASMBL_COORDS> </SEQ_ELEMENT> </SEARCH_DB> <SEARCH_DB DB_NAME="ProDom" DB_TYPE="Protein Domain database (subset of families with at least two domains)"> <SEQ_ELEMENT ACCESSION="pd:PD005680;sp:Q38708:Q38708_ALNGL" DESCRIPTION="spans 40 percent of the exon" FEAT_TYPE="mth2-3c7.171.1:Exon" METHOD="blastx" SCORE="40"> <ASMBL_COORDS> <COORDSET> <END5>86532</END5> <END3>85836</END3> </COORDSET> </ASMBL_COORDS> </SEQ_ELEMENT> </SEARCH_DB> </SEQUENCE_DB_MATCH> </EVIDENCE_TYPE> </MODEL_EVIDENCE> <EXON> <FEAT_NAME>1232.e00061</FEAT_NAME> <DATE>Dec 11 2004 12:04AM</DATE> <COORDSET> <END5>80758</END5> <END3>79820</END3> </COORDSET> <CDS> <FEAT_NAME>1232.c00061</FEAT_NAME> <DATE>Dec 11 2004 12:04AM</DATE> <COORDSET> <END5>80672</END5> <END3>79820</END3> </COORDSET> </CDS> <UTRS> <LEFT_UTR> <COORDSET> <END5>80758</END5> <END3>80673</END3> </COORDSET> </LEFT_UTR> </UTRS> </EXON> <EXON> <FEAT_NAME>1232.e00062</FEAT_NAME> <DATE>Dec 11 2004 12:04AM</DATE> <COORDSET> <END5>79229</END5> <END3>77688</END3> </COORDSET> <CDS> <FEAT_NAME>1232.c00062</FEAT_NAME> <DATE>Dec 11 2004 12:04AM</DATE> <COORDSET> <END5>79229</END5> <END3>78043</END3> </COORDSET> </CDS> <UTRS> <RIGHT_UTR> <COORDSET> <END5>78042</END5> <END3>77688</END3> </COORDSET> </RIGHT_UTR> </UTRS> </EXON> <CDS_SEQUENCE>ATGGAACTTTACAACTACATTCTTCACTTCACAGTTCTGTTCCTATGCATGTTTTCTCAGTTATTCAACTGCCAGCAAGTATACCTCAATAACACTGTCTTTGACTGCACTAACCCCTCTACTGTACCAAAAGGATACCTCTGCAATGGCCTTAAAAAATCATGTACTTCCTTTTTAGTTTTCAAGTCAAAACCTCTCTATGATAACCCTACAAAAATTGCCTACCTTCTTCGCTCTGAAGCATCAGCCATAGCCTCAATCAATAAGATCCCTTTAAATGAAAAGATTCCTTCAAATAAATCAATCATTGTCCCAGTCTTTTGTTCATGTGATGGAAATATCTACCAGCATAGTACATCTTACTCTGTAAAGCAGAATGATACTTACTATGAGTTGGTAAAAGAAACTTACCAAGGCCTTACAACCTGCCAGGCATTGATGGGTCAGAACTACTATGCTCCTGTCTCAATTCAACTTGATGCTGAGCTCACAGTTCCAATACTATGTGCTTGTCCCACAGCAAACCTGACGGCAAAAGGGGTTACCTCCTTACTCGTTCACATGGTGAACTATGGTGAAACGGTTAAGTCGATAGGAGAAGCTTATGGTGTTGATGAACATAGTATGCGAGAGGCCAATGAGTTGTCAGGGCTGCAAAGTGCAAACAGCAGTGTGATCCTCTTTGCATCGACGCCTATACTAGTTCCTCTGAGACGCAAGAATTGTAAAGAGAACTCAGATAGATTCTATTGCAAATGTTCCGAGGCACTACATGGAGATGAAAGCTCCAAGGGGATCTACTGTGACGAATCTCCTAGACGAAAAGTTCCTGCAAAATTGGTTGCTGCCTCAGGTATGGGAATTGGTACAGTCTTACTGTGTTTGTTTCTTTTGAGTTGCAAATTATATCAACACATAAAGAAAAGGAGAGCAAGTACTCATAAGGAAAAGTTATTCAGGCAAAACGGTGGTTACTTGTTACAAGAGAAGTTATCATCTTATGGAAATGGAGAAATGGCAAAGCTTTTTACGGCAGAAGAGCTGCAAAGAGCAACAGATAACTACAACCGGAGTAGATTTCTTGGTCAAGGTGGCTATGGCACGGTGTACAAAGGAATGTTACCAGATGGAACCATAGTTGCAGTTAAAAAGTCAAAAGAACTAGAAAGGAACCAGATAGAGACTTTTGTCAATGAAGTGGTCATCTTGTCACAGATCAACCACAGGAATATTGTCAAACTCTTAGGCTGTTGTCTTGAAACAGAAACTCCATTACTAGTTTATGAATTTATTCCCAACGGAACTCTTTCCCAACATATACATATGAAAGACCAAGAGTCCTCCCTTTCATGGGAAAACCGCCTAAGAATTGCATGTGAAGTTGCTGGAGCAGTGGCATATATGCATTTTTCGGCTTCTATTCCAATCTTCCACAGAGACATAAAACCCACAAACATACTACTAGACAGTAACTTTAGTGCCAAGGTATCTGATTTTGGGACATCAAGATCAATACCACTAGATAAGACTCACCTAACCACATTTGTAGGTGGAACTTACGGGTACATAGATCCTGAATATTTCCAGTCCAATCAATTCACTAATAAGAGTGATGTATACAGTTTCGGGGTCGTGCTTGTAGAGCTCATAACCAGTAGAAAGCCTATTTCATTCTATGATGAAGATGACGGTCAGAATTTGATTGCACATTTCATTTCAGTGATGAAGGAGAACCAAGTTTCTCAAATTATAGATGCTAGACTGCAAAAGGAAGCAGGGAAAGACACCATTCTTGCCATTTCAAGTCTTGCAAGGAGATGCTTGAGACTTAATCATAAGAAAAGACCAACAATGAAAGAAGTTTCAGCAGAATTAGAAACACTAAGAAAGGCACAAAGTTCTTTTGAAATCAACCATGATCATGATTCTTCATCAAGTGATGAAGAATCATTTGGGCACGGAATTAATGAATCAACAGACCAAGAGTCCAAAGAGGAAAGCAATTTATTTTCCTTACAAATAGAATCCGCGTCCTTCTGA</CDS_SEQUENCE> <PROTEIN_SEQUENCE>MELYNYILHFTVLFLCMFSQLFNCQQVYLNNTVFDCTNPSTVPKGYLCNGLKKSCTSFLVFKSKPLYDNPTKIAYLLRSEASAIASINKIPLNEKIPSNKSIIVPVFCSCDGNIYQHSTSYSVKQNDTYYELVKETYQGLTTCQALMGQNYYAPVSIQLDAELTVPILCACPTANLTAKGVTSLLVHMVNYGETVKSIGEAYGVDEHSMREANELSGLQSANSSVILFASTPILVPLRRKNCKENSDRFYCKCSEALHGDESSKGIYCDESPRRKVPAKLVAASGMGIGTVLLCLFLLSCKLYQHIKKRRASTHKEKLFRQNGGYLLQEKLSSYGNGEMAKLFTAEELQRATDNYNRSRFLGQGGYGTVYKGMLPDGTIVAVKKSKELERNQIETFVNEVVILSQINHRNIVKLLGCCLETETPLLVYEFIPNGTLSQHIHMKDQESSLSWENRLRIACEVAGAVAYMHFSASIPIFHRDIKPTNILLDSNFSAKVSDFGTSRSIPLDKTHLTTFVGGTYGYIDPEYFQSNQFTNKSDVYSFGVVLVELITSRKPISFYDEDDGQNLIAHFISVMKENQVSQIIDARLQKEAGKDTILAISSLARRCLRLNHKKRPTMKEVSAELETLRKAQSSFEINHDHDSSSSDEESFGHGINESTDQESKEESNLFSLQIESASF</PROTEIN_SEQUENCE> </MODEL> <TRANSCRIPT_SEQUENCE>CCGCGTGATAAGAACTAAACCATCTCTTTAAACACTGAAAACAATTGAAGTGTAACTCATTTCTTGTCTTCTCTAGAAACTTAATCATGGAACTTTACAACTACATTCTTCACTTCACAGTTCTGTTCCTATGCATGTTTTCTCAGTTATTCAACTGCCAGCAAGTATACCTCAATAACACTGTCTTTGACTGCACTAACCCCTCTACTGTACCAAAAGGATACCTCTGCAATGGCCTTAAAAAATCATGTACTTCCTTTTTAGTTTTCAAGTCAAAACCTCTCTATGATAACCCTACAAAAATTGCCTACCTTCTTCGCTCTGAAGCATCAGCCATAGCCTCAATCAATAAGATCCCTTTAAATGAAAAGATTCCTTCAAATAAATCAATCATTGTCCCAGTCTTTTGTTCATGTGATGGAAATATCTACCAGCATAGTACATCTTACTCTGTAAAGCAGAATGATACTTACTATGAGTTGGTAAAAGAAACTTACCAAGGCCTTACAACCTGCCAGGCATTGATGGGTCAGAACTACTATGCTCCTGTCTCAATTCAACTTGATGCTGAGCTCACAGTTCCAATACTATGTGCTTGTCCCACAGCAAACCTGACGGCAAAAGGGGTTACCTCCTTACTCGTTCACATGGTGAACTATGGTGAAACGGTTAAGTCGATAGGAGAAGCTTATGGTGTTGATGAACATAGTATGCGAGAGGCCAATGAGTTGTCAGGGCTGCAAAGTGCAAACAGCAGTGTGATCCTCTTTGCATCGACGCCTATACTAGTTCCTCTGAGACGCAAGAATTGTAAAGAGAACTCAGATAGATTCTATTGCAAATGTTCCGAGGCACTACATGGAGATGAAAGCTCCAAGGGGATCTACTGTGACGAATCTCCTAGACGAAAAGTTCCTGCAAAATTGGTTGCTGCCTCAGGTATATTTGTCTACTCTAAACCCTCTTCAAGAACAACTTTAAAAAAGTATAGGTTTTAGTGAAATAGTGGATTTTACATTTTAGCATAGCTAGTTAGGTTTGAAATTATGGGTTTTAGTTCAAAGAAGAAAAATAGGAAGAAATATAATTATAGTGAAATTTACTCAATACTAACTTGATACAAAGACTAAACTCTAACATCTATTTACAGAAATACATAGAATCAATCCTAGATAAATAGGAAAATCAGAAAATAAATAATCATAATAATGAGTAATATGTAAATTAATCCTAAGAGATAATCTAAAATACGCTAAGATTATACACTGATCCTAAGAAATAATCTAACATGCTCTAATATAATATCAAATATATTATAAGCTGTGTTTTCTTATATTTCTAATTGTTAGTAAGGATACAGGTAGGTAGATAAGGCTAGAATGTTTAAAAGTAATGCCTTAGCTATGCAGACATCTTGCAAGGCTTTTAGTGGAATAAACATAGTACTTTTCTGTTTGCTATTGAATATAAGGATGTTTCTTGCTAGTCACGGCAACCAACTGAATTTGAAAAAATAACTGTATTTGCAGGTATGGGAATTGGTACAGTCTTACTGTGTTTGTTTCTTTTGAGTTGCAAATTATATCAACACATAAAGAAAAGGAGAGCAAGTACTCATAAGGAAAAGTTATTCAGGCAAAACGGTGGTTACTTGTTACAAGAGAAGTTATCATCTTATGGAAATGGAGAAATGGCAAAGCTTTTTACGGCAGAAGAGCTGCAAAGAGCAACAGATAACTACAACCGGAGTAGATTTCTTGGTCAAGGTGGCTATGGCACGGTGTACAAAGGAATGTTACCAGATGGAACCATAGTTGCAGTTAAAAAGTCAAAAGAACTAGAAAGGAACCAGATAGAGACTTTTGTCAATGAAGTGGTCATCTTGTCACAGATCAACCACAGGAATATTGTCAAACTCTTAGGCTGTTGTCTTGAAACAGAAACTCCATTACTAGTTTATGAATTTATTCCCAACGGAACTCTTTCCCAACATATACATATGAAAGACCAAGAGTCCTCCCTTTCATGGGAAAACCGCCTAAGAATTGCATGTGAAGTTGCTGGAGCAGTGGCATATATGCATTTTTCGGCTTCTATTCCAATCTTCCACAGAGACATAAAACCCACAAACATACTACTAGACAGTAACTTTAGTGCCAAGGTATCTGATTTTGGGACATCAAGATCAATACCACTAGATAAGACTCACCTAACCACATTTGTAGGTGGAACTTACGGGTACATAGATCCTGAATATTTCCAGTCCAATCAATTCACTAATAAGAGTGATGTATACAGTTTCGGGGTCGTGCTTGTAGAGCTCATAACCAGTAGAAAGCCTATTTCATTCTATGATGAAGATGACGGTCAGAATTTGATTGCACATTTCATTTCAGTGATGAAGGAGAACCAAGTTTCTCAAATTATAGATGCTAGACTGCAAAAGGAAGCAGGGAAAGACACCATTCTTGCCATTTCAAGTCTTGCAAGGAGATGCTTGAGACTTAATCATAAGAAAAGACCAACAATGAAAGAAGTTTCAGCAGAATTAGAAACACTAAGAAAGGCACAAAGTTCTTTTGAAATCAACCATGATCATGATTCTTCATCAAGTGATGAAGAATCATTTGGGCACGGAATTAATGAATCAACAGACCAAGAGTCCAAAGAGGAAAGCAATTTATTTTCCTTACAAATAGAATCCGCGTCCTTCTGAATCACCGGATTGATACTCCTTTTTTGCTACCCCCAACGTAATTAGTAGTCCTTGACTCTCAAATCCCAATAGTTATCCACACAGGTTAGGCCCTTTAGATCCACTCTAGGACTAATTCTCGAGTTGGCAGTAGGGCATCTAGTTTTTTACACGCAGGGTTGGGCTACCTTATACTTGATTCATTATGTTTTGTGCTTGATTTTCAGCATAGGAATGAAGATGTATCTATACTATAGATGGCTTAGGATAAATGACTTATATTATTTAGCTTGTTTAAATCAAAAATTGGACAAACAATTGTTAGTAATTACTCCGCTCTGTTTCATAATAATAGTCACTTCTGCATTTTTTTATC</TRANSCRIPT_SEQUENCE> </TU> </TIGR> |
| |
Input:String | |
Name:TIGRXML |
<?xml version="1.0" encoding="ISO-8859-1"?> <TIGR> <TU> <FEAT_NAME>1402.t00019</FEAT_NAME> <DATE>3-Mar-2005</DATE> <GENE_INFO> <LOCUS>AC154034_19.1</LOCUS> <COM_NAME CURATED="0" IS_PRIMARY="1">Peptidoglycan-binding LysM</COM_NAME> <PUB_COMMENT> </PUB_COMMENT> <IS_PSEUDOGENE>0</IS_PSEUDOGENE> <FUNCT_ANNOT_EVIDENCE TYPE="CURATED"/> <DATE>3-Mar-2005</DATE> </GENE_INFO> <COORDSET> <END5>76625</END5> <END3>77122</END3> </COORDSET> <MODEL COMMENT="IMGA|AC154034_19.1 AC154034.1 76625-77122 F EGN_Mt050217 20050303"> <FEAT_NAME>1402.m00019</FEAT_NAME> <CDNA_SUPPORT> <ACCESSION>spans 100 percent of the model length</ACCESSION> <ACCESSION ANNOT_INCORP="1" DBXREF="MENS|MtC63349_GC" IS_FLI="1" UNIQUE_TO_ISOFORM="1">cDNA support spans 100 percent of the model</ACCESSION> <ACCESSION ANNOT_INCORP="1" DBXREF="MtEST|BF645904" IS_FLI="1" UNIQUE_TO_ISOFORM="1">cDNA support spans 100 percent of the model</ACCESSION> </CDNA_SUPPORT> <DATE>3-Mar-2005</DATE> <COORDSET> <END5>76732</END5> <END3>77022</END3> </COORDSET> <MODEL_ATTRIBUTE> <ATTRIBUTE_TYPE METHOD="MW,molwt_update.dbi"> <ATT_SCORE DESC="Molecular Weight">11021.72</ATT_SCORE> </ATTRIBUTE_TYPE> <ATTRIBUTE_TYPE METHOD="PI,molwt_update.dbi"> <ATT_SCORE DESC="Isoelectric point">5.6262</ATT_SCORE> </ATTRIBUTE_TYPE> <ATTRIBUTE_TYPE METHOD="SP-HMM,signalP-2.0"> <ATT_SCORE DESC="HMM-position">25</ATT_SCORE> <ATT_SCORE DESC="HMM-prediction">Signal peptide</ATT_SCORE> <ATT_SCORE DESC="HMM-SPprob">0.984</ATT_SCORE> <ATT_SCORE DESC="HMM-SAprob">0.016</ATT_SCORE> <ATT_SCORE DESC="HMM-cleavprob">0.927</ATT_SCORE> </ATTRIBUTE_TYPE> <ATTRIBUTE_TYPE METHOD="SP-NN,signalP-2.0"> <ATT_SCORE DESC="NN-position">25</ATT_SCORE> <ATT_SCORE DESC="NN-cleavsite">CES-RR</ATT_SCORE> <ATT_SCORE DESC="NN-maxY">0.761</ATT_SCORE> <ATT_SCORE DESC="NN-meanS">0.849</ATT_SCORE> </ATTRIBUTE_TYPE> <ATTRIBUTE_TYPE METHOD="targetP,targetP_update.dbi"> <ATT_SCORE DESC="Location">secreted</ATT_SCORE> <ATT_SCORE DESC="c:m:s:o scores">0.017:0.106:0.968:0.006</ATT_SCORE> <ATT_SCORE DESC="RC-value">1</ATT_SCORE> <ATT_SCORE DESC="network:peplen">plant:96</ATT_SCORE> <ATT_SCORE DESC="c:m:s:o cutoffs">0:0:0:0</ATT_SCORE> </ATTRIBUTE_TYPE> <ATTRIBUTE_TYPE METHOD="EGN_Mt050217"> <ATT_SCORE DESC="IMGA gene call evidence class">F</ATT_SCORE> </ATTRIBUTE_TYPE> </MODEL_ATTRIBUTE> <EXON> <FEAT_NAME>1402.e00070</FEAT_NAME> <DATE>Mar 4 2005 3:22PM</DATE> <COORDSET> <END5>76625</END5> <END3>77122</END3> </COORDSET> <CDS> <FEAT_NAME>1402.c00070</FEAT_NAME> <DATE>Mar 4 2005 3:22PM</DATE> <COORDSET> <END5>76732</END5> <END3>77022</END3> </COORDSET> </CDS> <UTRS> <LEFT_UTR> <COORDSET> <END5>76625</END5> <END3>76731</END3> </COORDSET> </LEFT_UTR> <RIGHT_UTR> <COORDSET> <END5>77023</END5> <END3>77122</END3> </COORDSET> </RIGHT_UTR> </UTRS> </EXON> <CDS_SEQUENCE>ATGGCTATGAGAATTTCTAGATACTGTGTTTTATTTTCAGCAGTAATAATTCTATTATTGAATTGCTGTGAATCAAGAAGAAGCGAATTGACGGTTGAGATGAAGCAGAGGATTGCCAATAACAACAAAGCGTGTGATGAGATATATGTGGTTCGTGAAGGAGAGACTCTTCATACAATAAGTGAAAAATGTGGTGATCCATTTATTGTAGAAGAGAATCCACATATTCATGACCCAGATGATGTTTTTCCAGGTCTTGTTATCAAGATTAATCCTTTCACCAATCGATAG</CDS_SEQUENCE> <PROTEIN_SEQUENCE>MAMRISRYCVLFSAVIILLLNCCESRRSELTVEMKQRIANNNKACDEIYVVREGETLHTISEKCGDPFIVEENPHIHDPDDVFPGLVIKINPFTNR</PROTEIN_SEQUENCE> </MODEL> <TRANSCRIPT_SEQUENCE>TCGTGACTATATTTGAAAGCTAAACCTTCAAGAAGCTGACAACATCAAACAAGCTAACCTTAGTCATATATATACAATATATGGCTTGTGCATTTTCTTCAATAACAATGGCTATGAGAATTTCTAGATACTGTGTTTTATTTTCAGCAGTAATAATTCTATTATTGAATTGCTGTGAATCAAGAAGAAGCGAATTGACGGTTGAGATGAAGCAGAGGATTGCCAATAACAACAAAGCGTGTGATGAGATATATGTGGTTCGTGAAGGAGAGACTCTTCATACAATAAGTGAAAAATGTGGTGATCCATTTATTGTAGAAGAGAATCCACATATTCATGACCCAGATGATGTTTTTCCAGGTCTTGTTATCAAGATTAATCCTTTCACCAATCGATAGAAGTCTTGTCTTTTGGGGTCTTGTTGAAGGTTAAAGTACAATGTATGAAGATACTCTTTTCACAGAAAGAATAGCCTCTTAATTATACTTGTGTTCCTTC</TRANSCRIPT_SEQUENCE> </TU> </TIGR> |
| |
Input:String | |
Name:TIGRXML |
<?xml version='1.0' encoding='ISO-8859-1'?> <TIGR> <TU> <FEAT_NAME>752.t00020</FEAT_NAME> <DATE>10-Dec-2004</DATE> <GENE_INFO> <LOCUS>AC123570_20.1</LOCUS> <COM_NAME CURATED="0" IS_PRIMARY="1">Protein kinase-like; Peptidoglycan-binding LysM; Serine/threonine protein kinase; Tyrosine protein kinase</COM_NAME> <PUB_COMMENT> </PUB_COMMENT> <IS_PSEUDOGENE>0</IS_PSEUDOGENE> <FUNCT_ANNOT_EVIDENCE TYPE="CURATED"/> <DATE>10-Dec-2004</DATE> </GENE_INFO> <COORDSET> <END5>83843</END5> <END3>87631</END3> </COORDSET> <MODEL COMMENT="IMGA|AC123570_20.1 AC123570.7 83843-87631 H EGN_Mt041209 20041210"> <FEAT_NAME>752.m00020</FEAT_NAME> <DATE>10-Dec-2004</DATE> <COORDSET> <END5>83960</END5> <END3>87505</END3> </COORDSET> <MODEL_ATTRIBUTE> <ATTRIBUTE_TYPE METHOD="MW,molwt_update.dbi"> <ATT_SCORE DESC="Molecular Weight">64352.98</ATT_SCORE> </ATTRIBUTE_TYPE> <ATTRIBUTE_TYPE METHOD="PI,molwt_update.dbi"> <ATT_SCORE DESC="Isoelectric point">5.0775</ATT_SCORE> </ATTRIBUTE_TYPE> <ATTRIBUTE_TYPE METHOD="SP-HMM,signalP-2.0"> <ATT_SCORE DESC="HMM-position">23</ATT_SCORE> <ATT_SCORE DESC="HMM-prediction">Signal peptide</ATT_SCORE> <ATT_SCORE DESC="HMM-SPprob">0.997</ATT_SCORE> <ATT_SCORE DESC="HMM-SAprob">0.002</ATT_SCORE> <ATT_SCORE DESC="HMM-cleavprob">0.788</ATT_SCORE> </ATTRIBUTE_TYPE> <ATTRIBUTE_TYPE METHOD="SP-NN,signalP-2.0"> <ATT_SCORE DESC="NN-position">23</ATT_SCORE> <ATT_SCORE DESC="NN-cleavsite">ITS-ES</ATT_SCORE> <ATT_SCORE DESC="NN-maxY">0.708</ATT_SCORE> <ATT_SCORE DESC="NN-meanS">0.937</ATT_SCORE> </ATTRIBUTE_TYPE> <ATTRIBUTE_TYPE METHOD="targetP,targetP_update.dbi"> <ATT_SCORE DESC="Location">secreted</ATT_SCORE> <ATT_SCORE DESC="c:m:s:o scores">0.007:0.066:0.954:0.022</ATT_SCORE> <ATT_SCORE DESC="RC-value">1</ATT_SCORE> <ATT_SCORE DESC="network:peplen">plant:150</ATT_SCORE> <ATT_SCORE DESC="c:m:s:o cutoffs">0:0:0:0</ATT_SCORE> </ATTRIBUTE_TYPE> <ATTRIBUTE_TYPE METHOD="EGN_Mt041209"> <ATT_SCORE DESC="IMGA gene call evidence class">H</ATT_SCORE> </ATTRIBUTE_TYPE> </MODEL_ATTRIBUTE> <MODEL_EVIDENCE> <EVIDENCE_TYPE> <SEQUENCE_DB_MATCH> <SEARCH_DB DB_NAME="MENS|MtAA" DB_TYPE="Database of peptides predicted from Medicago truncatula EST-Clusters"> <SEQ_ELEMENT ACCESSION="MtD04912_1_AA" DESCRIPTION="spans 89 percent of the exon" FEAT_TYPE="mth2-33l22.201.1:Exon" METHOD="blastx" SCORE="89"> <ASMBL_COORDS> <COORDSET> <END5>83960</END5> <END3>84593</END3> </COORDSET> </ASMBL_COORDS> </SEQ_ELEMENT> </SEARCH_DB> <SEARCH_DB DB_NAME="ProDom" DB_TYPE="Protein Domain database (subset of families with at least two domains)"> <SEQ_ELEMENT ACCESSION="pd:PD023767;sp:Q9LVE3:Q9LVE3_ARATH" DESCRIPTION="spans 47 percent of the exon" FEAT_TYPE="mth2-33l22.201.1:Exon" METHOD="blastx" SCORE="47"> <ASMBL_COORDS> <COORDSET> <END5>83960</END5> <END3>84593</END3> </COORDSET> </ASMBL_COORDS> </SEQ_ELEMENT> </SEARCH_DB> <SEARCH_DB DB_NAME="MENS|MtAA" DB_TYPE="Database of peptides predicted from Medicago truncatula EST-Clusters"> <SEQ_ELEMENT ACCESSION="MtD12278_1_AA" DESCRIPTION="spans 98 percent of the exon" FEAT_TYPE="mth2-33l22.201.4:Exon" METHOD="blastx" SCORE="98"> <ASMBL_COORDS> <COORDSET> <END5>85561</END5> <END3>85727</END3> </COORDSET> </ASMBL_COORDS> </SEQ_ELEMENT> <SEQ_ELEMENT ACCESSION="MtD08014_1_AA" DESCRIPTION="spans 100 percent of the exon" FEAT_TYPE="mth2-33l22.201.5:Exon" METHOD="blastx" SCORE="100"> <ASMBL_COORDS> <COORDSET> <END5>86040</END5> <END3>86129</END3> </COORDSET> </ASMBL_COORDS> </SEQ_ELEMENT> <SEQ_ELEMENT ACCESSION="MtD08289_1_AA" DESCRIPTION="spans 100 percent of the exon" FEAT_TYPE="mth2-33l22.201.5:Exon" METHOD="blastx" SCORE="100"> <ASMBL_COORDS> <COORDSET> <END5>86040</END5> <END3>86129</END3> </COORDSET> </ASMBL_COORDS> </SEQ_ELEMENT> </SEARCH_DB> <SEARCH_DB DB_NAME="ProDom" DB_TYPE="Protein Domain database (subset of families with at least two domains)"> <SEQ_ELEMENT ACCESSION="pd:PD000001;sp:Q9LVE3:Q9LVE3_ARATH" DESCRIPTION="spans 100 percent of the exon" FEAT_TYPE="mth2-33l22.201.5:Exon" METHOD="blastx" SCORE="100"> <ASMBL_COORDS> <COORDSET> <END5>86040</END5> <END3>86129</END3> </COORDSET> </ASMBL_COORDS> </SEQ_ELEMENT> <SEQ_ELEMENT ACCESSION="pd:PD000001;sp:Q84QM6:Q84QM6_EEEEE" DESCRIPTION="spans 100 percent of the exon" FEAT_TYPE="mth2-33l22.201.5:Exon" METHOD="blastx" SCORE="100"> <ASMBL_COORDS> <COORDSET> <END5>86040</END5> <END3>86129</END3> </COORDSET> </ASMBL_COORDS> </SEQ_ELEMENT> </SEARCH_DB> <SEARCH_DB DB_NAME="MENS|MtAA" DB_TYPE="Database of peptides predicted from Medicago truncatula EST-Clusters"> <SEQ_ELEMENT ACCESSION="MtD07292_1_AA" DESCRIPTION="spans 100 percent of the exon" FEAT_TYPE="mth2-33l22.201.6:Exon" METHOD="blastx" SCORE="100"> <ASMBL_COORDS> <COORDSET> <END5>86276</END5> <END3>86369</END3> </COORDSET> </ASMBL_COORDS> </SEQ_ELEMENT> <SEQ_ELEMENT ACCESSION="MtD12384_1_AA" DESCRIPTION="spans 100 percent of the exon" FEAT_TYPE="mth2-33l22.201.6:Exon" METHOD="blastx" SCORE="100"> <ASMBL_COORDS> <COORDSET> <END5>86276</END5> <END3>86369</END3> </COORDSET> </ASMBL_COORDS> </SEQ_ELEMENT> <SEQ_ELEMENT ACCESSION="MtD03985_1_AA" DESCRIPTION="spans 100 percent of the exon" FEAT_TYPE="mth2-33l22.201.6:Exon" METHOD="blastx" SCORE="100"> <ASMBL_COORDS> <COORDSET> <END5>86276</END5> <END3>86369</END3> </COORDSET> </ASMBL_COORDS> </SEQ_ELEMENT> </SEARCH_DB> <SEARCH_DB DB_NAME="ProDom" DB_TYPE="Protein Domain database (subset of families with at least two domains)"> <SEQ_ELEMENT ACCESSION="pd:PD000001;sp:Q9LVE3:Q9LVE3_ARATH" DESCRIPTION="spans 100 percent of the exon" FEAT_TYPE="mth2-33l22.201.6:Exon" METHOD="blastx" SCORE="100"> <ASMBL_COORDS> <COORDSET> <END5>86276</END5> <END3>86369</END3> </COORDSET> </ASMBL_COORDS> </SEQ_ELEMENT> <SEQ_ELEMENT ACCESSION="pd:PD000001;sp:Q84QM6:Q84QM6_EEEEE" DESCRIPTION="spans 100 percent of the exon" FEAT_TYPE="mth2-33l22.201.6:Exon" METHOD="blastx" SCORE="100"> <ASMBL_COORDS> <COORDSET> <END5>86276</END5> <END3>86369</END3> </COORDSET> </ASMBL_COORDS> </SEQ_ELEMENT> </SEARCH_DB> <SEARCH_DB DB_NAME="MENS|MtAA" DB_TYPE="Database of peptides predicted from Medicago truncatula EST-Clusters"> <SEQ_ELEMENT ACCESSION="MtD07292_1_AA" DESCRIPTION="spans 100 percent of the exon" FEAT_TYPE="mth2-33l22.201.7:Exon" METHOD="blastx" SCORE="100"> <ASMBL_COORDS> <COORDSET> <END5>86442</END5> <END3>86530</END3> </COORDSET> </ASMBL_COORDS> </SEQ_ELEMENT> <SEQ_ELEMENT ACCESSION="MtD03985_1_AA" DESCRIPTION="spans 100 percent of the exon" FEAT_TYPE="mth2-33l22.201.7:Exon" METHOD="blastx" SCORE="100"> <ASMBL_COORDS> <COORDSET> <END5>86442</END5> <END3>86530</END3> </COORDSET> </ASMBL_COORDS> </SEQ_ELEMENT> </SEARCH_DB> <SEARCH_DB DB_NAME="ProDom" DB_TYPE="Protein Domain database (subset of families with at least two domains)"> <SEQ_ELEMENT ACCESSION="pd:PD000001;sp:Q9LVE3:Q9LVE3_ARATH" DESCRIPTION="spans 100 percent of the exon" FEAT_TYPE="mth2-33l22.201.7:Exon" METHOD="blastx" SCORE="100"> <ASMBL_COORDS> <COORDSET> <END5>86442</END5> <END3>86530</END3> </COORDSET> </ASMBL_COORDS> </SEQ_ELEMENT> <SEQ_ELEMENT ACCESSION="pd:PD000001;sp:Q84QM6:Q84QM6_EEEEE" DESCRIPTION="spans 100 percent of the exon" FEAT_TYPE="mth2-33l22.201.7:Exon" METHOD="blastx" SCORE="100"> <ASMBL_COORDS> <COORDSET> <END5>86442</END5> <END3>86530</END3> </COORDSET> </ASMBL_COORDS> </SEQ_ELEMENT> <SEQ_ELEMENT ACCESSION="pd:PD000001;sp:Q9LT87:Q9LT87_ARATH" DESCRIPTION="spans 100 percent of the exon" FEAT_TYPE="mth2-33l22.201.7:Exon" METHOD="blastx" SCORE="100"> <ASMBL_COORDS> <COORDSET> <END5>86442</END5> <END3>86530</END3> </COORDSET> </ASMBL_COORDS> </SEQ_ELEMENT> </SEARCH_DB> <SEARCH_DB DB_NAME="MENS|MtAA" DB_TYPE="Database of peptides predicted from Medicago truncatula EST-Clusters"> <SEQ_ELEMENT ACCESSION="MtD07292_1_AA" DESCRIPTION="spans 100 percent of the exon" FEAT_TYPE="mth2-33l22.201.8:Exon" METHOD="blastx" SCORE="100"> <ASMBL_COORDS> <COORDSET> <END5>86678</END5> <END3>86772</END3> </COORDSET> </ASMBL_COORDS> </SEQ_ELEMENT> <SEQ_ELEMENT ACCESSION="MtD01748_1_AA" DESCRIPTION="spans 100 percent of the exon" FEAT_TYPE="mth2-33l22.201.8:Exon" METHOD="blastx" SCORE="100"> <ASMBL_COORDS> <COORDSET> <END5>86678</END5> <END3>86772</END3> </COORDSET> </ASMBL_COORDS> </SEQ_ELEMENT> <SEQ_ELEMENT ACCESSION="MtD06520_1_AA" DESCRIPTION="spans 100 percent of the exon" FEAT_TYPE="mth2-33l22.201.8:Exon" METHOD="blastx" SCORE="100"> <ASMBL_COORDS> <COORDSET> <END5>86678</END5> <END3>86772</END3> </COORDSET> </ASMBL_COORDS> </SEQ_ELEMENT> <SEQ_ELEMENT ACCESSION="MtD08318_1_AA" DESCRIPTION="spans 100 percent of the exon" FEAT_TYPE="mth2-33l22.201.8:Exon" METHOD="blastx" SCORE="100"> <ASMBL_COORDS> <COORDSET> <END5>86678</END5> <END3>86772</END3> </COORDSET> </ASMBL_COORDS> </SEQ_ELEMENT> <SEQ_ELEMENT ACCESSION="MtD03985_1_AA" DESCRIPTION="spans 100 percent of the exon" FEAT_TYPE="mth2-33l22.201.8:Exon" METHOD="blastx" SCORE="100"> <ASMBL_COORDS> <COORDSET> <END5>86678</END5> <END3>86772</END3> </COORDSET> </ASMBL_COORDS> </SEQ_ELEMENT> </SEARCH_DB> <SEARCH_DB DB_NAME="ProDom" DB_TYPE="Protein Domain database (subset of families with at least two domains)"> <SEQ_ELEMENT ACCESSION="pd:PD000001;sp:Q9XID3:Q9XID3_ARATH" DESCRIPTION="spans 62 percent of the exon" FEAT_TYPE="mth2-33l22.201.9:Exon" METHOD="blastx" SCORE="62"> <ASMBL_COORDS> <COORDSET> <END5>86866</END5> <END3>87043</END3> </COORDSET> </ASMBL_COORDS> </SEQ_ELEMENT> </SEARCH_DB> <SEARCH_DB DB_NAME="MENS|MtAA" DB_TYPE="Database of peptides predicted from Medicago truncatula EST-Clusters"> <SEQ_ELEMENT ACCESSION="MtD27703_1_AA" DESCRIPTION="spans 100 percent of the exon" FEAT_TYPE="mth2-33l22.201.10:Exon" METHOD="blastx" SCORE="100"> <ASMBL_COORDS> <COORDSET> <END5>87165</END5> <END3>87266</END3> </COORDSET> </ASMBL_COORDS> </SEQ_ELEMENT> <SEQ_ELEMENT ACCESSION="MtD03343_1_AA" DESCRIPTION="spans 100 percent of the exon" FEAT_TYPE="mth2-33l22.201.10:Exon" METHOD="blastx" SCORE="100"> <ASMBL_COORDS> <COORDSET> <END5>87165</END5> <END3>87266</END3> </COORDSET> </ASMBL_COORDS> </SEQ_ELEMENT> </SEARCH_DB> <SEARCH_DB DB_NAME="ProDom" DB_TYPE="Protein Domain database (subset of families with at least two domains)"> <SEQ_ELEMENT ACCESSION="pd:PD764496;sp:Q84QM6:Q84QM6_EEEEE" DESCRIPTION="spans 73 percent of the exon" FEAT_TYPE="mth2-33l22.201.10:Exon" METHOD="blastx" SCORE="73"> <ASMBL_COORDS> <COORDSET> <END5>87165</END5> <END3>87266</END3> </COORDSET> </ASMBL_COORDS> </SEQ_ELEMENT> <SEQ_ELEMENT ACCESSION="pd:PD764496;sp:Q9LVE3:Q9LVE3_ARATH" DESCRIPTION="spans 73 percent of the exon" FEAT_TYPE="mth2-33l22.201.10:Exon" METHOD="blastx" SCORE="73"> <ASMBL_COORDS> <COORDSET> <END5>87165</END5> <END3>87266</END3> </COORDSET> </ASMBL_COORDS> </SEQ_ELEMENT> </SEARCH_DB> <SEARCH_DB DB_NAME="MENS|MtAA" DB_TYPE="Database of peptides predicted from Medicago truncatula EST-Clusters"> <SEQ_ELEMENT ACCESSION="MtD27703_1_AA" DESCRIPTION="spans 64 percent of the exon" FEAT_TYPE="mth2-33l22.201.11:Exon" METHOD="blastx" SCORE="64"> <ASMBL_COORDS> <COORDSET> <END5>87344</END5> <END3>87505</END3> </COORDSET> </ASMBL_COORDS> </SEQ_ELEMENT> <SEQ_ELEMENT ACCESSION="MtD03343_1_AA" DESCRIPTION="spans 64 percent of the exon" FEAT_TYPE="mth2-33l22.201.11:Exon" METHOD="blastx" SCORE="64"> <ASMBL_COORDS> <COORDSET> <END5>87344</END5> <END3>87505</END3> </COORDSET> </ASMBL_COORDS> </SEQ_ELEMENT> </SEARCH_DB> <SEARCH_DB DB_NAME="ProDom" DB_TYPE="Protein Domain database (subset of families with at least two domains)"> <SEQ_ELEMENT ACCESSION="pd:PD764496;sp:Q9LVE3:Q9LVE3_ARATH" DESCRIPTION="spans 53 percent of the exon" FEAT_TYPE="mth2-33l22.201.11:Exon" METHOD="blastx" SCORE="53"> <ASMBL_COORDS> <COORDSET> <END5>87344</END5> <END3>87505</END3> </COORDSET> </ASMBL_COORDS> </SEQ_ELEMENT> </SEARCH_DB> </SEQUENCE_DB_MATCH> </EVIDENCE_TYPE> </MODEL_EVIDENCE> <EXON> <FEAT_NAME>752.e00078</FEAT_NAME> <DATE>Dec 10 2004 4:00PM</DATE> <COORDSET> <END5>83843</END5> <END3>84593</END3> </COORDSET> <CDS> <FEAT_NAME>752.c00078</FEAT_NAME> <DATE>Dec 10 2004 4:00PM</DATE> <COORDSET> <END5>83960</END5> <END3>84593</END3> </COORDSET> </CDS> <UTRS> <LEFT_UTR> <COORDSET> <END5>83843</END5> <END3>83959</END3> </COORDSET> </LEFT_UTR> </UTRS> </EXON> <EXON> <FEAT_NAME>752.e00079</FEAT_NAME> <DATE>Dec 10 2004 4:00PM</DATE> <COORDSET> <END5>85025</END5> <END3>85058</END3> </COORDSET> <CDS> <FEAT_NAME>752.c00079</FEAT_NAME> <DATE>Dec 10 2004 4:00PM</DATE> <COORDSET> <END5>85025</END5> <END3>85058</END3> </COORDSET> </CDS> </EXON> <EXON> <FEAT_NAME>752.e00080</FEAT_NAME> <DATE>Dec 10 2004 4:00PM</DATE> <COORDSET> <END5>85387</END5> <END3>85463</END3> </COORDSET> <CDS> <FEAT_NAME>752.c00080</FEAT_NAME> <DATE>Dec 10 2004 4:00PM</DATE> <COORDSET> <END5>85387</END5> <END3>85463</END3> </COORDSET> </CDS> </EXON> <EXON> <FEAT_NAME>752.e00081</FEAT_NAME> <DATE>Dec 10 2004 4:00PM</DATE> <COORDSET> <END5>85561</END5> <END3>85727</END3> </COORDSET> <CDS> <FEAT_NAME>752.c00081</FEAT_NAME> <DATE>Dec 10 2004 4:00PM</DATE> <COORDSET> <END5>85561</END5> <END3>85727</END3> </COORDSET> </CDS> </EXON> <EXON> <FEAT_NAME>752.e00082</FEAT_NAME> <DATE>Dec 10 2004 4:00PM</DATE> <COORDSET> <END5>86040</END5> <END3>86129</END3> </COORDSET> <CDS> <FEAT_NAME>752.c00082</FEAT_NAME> <DATE>Dec 10 2004 4:00PM</DATE> <COORDSET> <END5>86040</END5> <END3>86129</END3> </COORDSET> </CDS> </EXON> <EXON> <FEAT_NAME>752.e00083</FEAT_NAME> <DATE>Dec 10 2004 4:00PM</DATE> <COORDSET> <END5>86276</END5> <END3>86369</END3> </COORDSET> <CDS> <FEAT_NAME>752.c00083</FEAT_NAME> <DATE>Dec 10 2004 4:00PM</DATE> <COORDSET> <END5>86276</END5> <END3>86369</END3> </COORDSET> </CDS> </EXON> <EXON> <FEAT_NAME>752.e00084</FEAT_NAME> <DATE>Dec 10 2004 4:00PM</DATE> <COORDSET> <END5>86442</END5> <END3>86530</END3> </COORDSET> <CDS> <FEAT_NAME>752.c00084</FEAT_NAME> <DATE>Dec 10 2004 4:00PM</DATE> <COORDSET> <END5>86442</END5> <END3>86530</END3> </COORDSET> </CDS> </EXON> <EXON> <FEAT_NAME>752.e00085</FEAT_NAME> <DATE>Dec 10 2004 4:00PM</DATE> <COORDSET> <END5>86678</END5> <END3>86772</END3> </COORDSET> <CDS> <FEAT_NAME>752.c00085</FEAT_NAME> <DATE>Dec 10 2004 4:00PM</DATE> <COORDSET> <END5>86678</END5> <END3>86772</END3> </COORDSET> </CDS> </EXON> <EXON> <FEAT_NAME>752.e00086</FEAT_NAME> <DATE>Dec 10 2004 4:00PM</DATE> <COORDSET> <END5>86866</END5> <END3>87043</END3> </COORDSET> <CDS> <FEAT_NAME>752.c00086</FEAT_NAME> <DATE>Dec 10 2004 4:00PM</DATE> <COORDSET> <END5>86866</END5> <END3>87043</END3> </COORDSET> </CDS> </EXON> <EXON> <FEAT_NAME>752.e00087</FEAT_NAME> <DATE>Dec 10 2004 4:00PM</DATE> <COORDSET> <END5>87165</END5> <END3>87266</END3> </COORDSET> <CDS> <FEAT_NAME>752.c00087</FEAT_NAME> <DATE>Dec 10 2004 4:00PM</DATE> <COORDSET> <END5>87165</END5> <END3>87266</END3> </COORDSET> </CDS> </EXON> <EXON> <FEAT_NAME>752.e00088</FEAT_NAME> <DATE>Dec 10 2004 4:00PM</DATE> <COORDSET> <END5>87344</END5> <END3>87631</END3> </COORDSET> <CDS> <FEAT_NAME>752.c00088</FEAT_NAME> <DATE>Dec 10 2004 4:00PM</DATE> <COORDSET> <END5>87344</END5> <END3>87505</END3> </COORDSET> </CDS> <UTRS> <RIGHT_UTR> <COORDSET> <END5>87506</END5> <END3>87631</END3> </COORDSET> </RIGHT_UTR> </UTRS> </EXON> <CDS_SEQUENCE>ATGGAACAACCATTAAAATTCAGATTATCACTTTTATTCTTGTTACTTGTCTTGCAATCCATCACTTCAGAATCAAAATGTAGCAAAACTTGTGACTTAGCTTTAGCTTCCTATTATATAAGGCCAGGTACAACCTTGGCAAATATTTCAAAGGTCATGCAATCCAATGTTGTTTCAAAAGAAGAAGATATTCTCAGCTACAACACAGCAATTACAAACATAGATGCTATCCAATCCGATACAAGAGTGAATGTTCCCTTCCCTTGTGATTGCATCAATGATGAGTTTCTTGGTCACACATTTCTCTACAAGCTTCGCCTTGGAGATATCTATCCTTCCATTGCTGAGAGGACTTATACAAATTTGACTACCGAGGAGTGGATGGAGAGAGTCAACAGTTATCCTGGAACCGATCTTCCTGTTTCTGCGATGGTTAATGTTACTGTTAACTGTTCCTGTGGGAGCAGAGAGGTTTCTAAGGATTATGGTTTGTTCATCACATACCCTCTTAGTTCTAAGGACACTTTGGAGTCTATTTCTAAGGATACCATGATTGAGGCTGAGTTGCTGCAGAGGTACAACCCTGGTGTCAATTTCAGCCAAGGAAGTGGTCTTGTTTTTATTCCAGGGAAAGATGAAAATGGATTTTATGTTCCCTTACCCCCTAGATACTTTCGAATGAAGAATGGAGAAGAAAAGTCTAAATTGTCACCAGATGATTCTATGACACCTTCAACTAAAGATGTTGATAAAGATACCAATGGTGATACTGGATCCAGATATATTTGGTTAGACAAATCACCAGAGTTTTCGTACGAAGAACTCGCCAATGCTACAGATAACTTCAGTTTGGCTAAAAAAATTGGTCAAGGTGGTTTTGGTGAGGTCTACTATGGAGAGTTGAGAGGCCAGAAAATTGCAATCAAGAAGATGAAGATGCAAGCAACAAGAGAATTTCTTTCTGAACTGAAAGTGTTAACAAGTGTTCATCACCGGAACCTGGTACACTTGATTGGATATTGTGTTGAGGGATTTCTATTCCTTGTGTATGAATACATGGAAAATGGAAACTTAAACCAACATCTACATAATTCAGAGAAAGAACCGATAACGTTGTCTACAAGGATGAAAATTGCCCTGGATGTTGCGAGAGGCCTTGAGTATATTCATGATCATTCCATTCCTGTTGCAGATTTTGGATTAACCAAGCTTACTGATGCTGCAAGTTCAGCAGATAACACTGATCATGTGGCAGGCACATTTGGTTACATGCCACCTGAAAATGCATACGGACGTATTTCTCGCAAGATAGATGTGTACGCTTTTGGAGTTGTTCTTTATGAACTAATTTCTGCTAAAGCAGCAGTGATCAAGATCGATAAAACCGAGTTCGAGTTGAAGAGCCTTGAGATTAAGACCAATGAATCTATTGATGAGTACAAGAGCCTTGTAGCTTTGTTTGATGAAGTTATGGATCAAACGGGAGATCCTATAGAAGGTCTAAGAAAGCTGGTGGATCCAAGGCTAGGATATAACTATTCAATTGATTCCATTAGCAAGATGGCAAAGCTTGCCAAGGCTTGCATAAACCGAGATCCGAAACAACGTCCAAAAATGAGAGACCTTGTGGTTTCTCTTATGAAACTGAATTATACTATTGATGATGAAAGTAGGACAGGTAGCGCAGAGTTGAGTCTTGCTGTGGAGCATGATTCAAATTGA</CDS_SEQUENCE> <PROTEIN_SEQUENCE>MEQPLKFRLSLLFLLLVLQSITSESKCSKTCDLALASYYIRPGTTLANISKVMQSNVVSKEEDILSYNTAITNIDAIQSDTRVNVPFPCDCINDEFLGHTFLYKLRLGDIYPSIAERTYTNLTTEEWMERVNSYPGTDLPVSAMVNVTVNCSCGSREVSKDYGLFITYPLSSKDTLESISKDTMIEAELLQRYNPGVNFSQGSGLVFIPGKDENGFYVPLPPRYFRMKNGEEKSKLSPDDSMTPSTKDVDKDTNGDTGSRYIWLDKSPEFSYEELANATDNFSLAKKIGQGGFGEVYYGELRGQKIAIKKMKMQATREFLSELKVLTSVHHRNLVHLIGYCVEGFLFLVYEYMENGNLNQHLHNSEKEPITLSTRMKIALDVARGLEYIHDHSIPVADFGLTKLTDAASSADNTDHVAGTFGYMPPENAYGRISRKIDVYAFGVVLYELISAKAAVIKIDKTEFELKSLEIKTNESIDEYKSLVALFDEVMDQTGDPIEGLRKLVDPRLGYNYSIDSISKMAKLAKACINRDPKQRPKMRDLVVSLMKLNYTIDDESRTGSAELSLAVEHDSN</PROTEIN_SEQUENCE> </MODEL> <TRANSCRIPT_SEQUENCE>TCTTTCTCAAAATCCTATTTCCATTTTCCATATAGCATGCATAATTGCTAACACCAGTTTACATATTCAAGACACCCAAATTCTTATCTGTGTTCATATTGTTCTACTCTCTACACAATGGAACAACCATTAAAATTCAGATTATCACTTTTATTCTTGTTACTTGTCTTGCAATCCATCACTTCAGAATCAAAATGTAGCAAAACTTGTGACTTAGCTTTAGCTTCCTATTATATAAGGCCAGGTACAACCTTGGCAAATATTTCAAAGGTCATGCAATCCAATGTTGTTTCAAAAGAAGAAGATATTCTCAGCTACAACACAGCAATTACAAACATAGATGCTATCCAATCCGATACAAGAGTGAATGTTCCCTTCCCTTGTGATTGCATCAATGATGAGTTTCTTGGTCACACATTTCTCTACAAGCTTCGCCTTGGAGATATCTATCCTTCCATTGCTGAGAGGACTTATACAAATTTGACTACCGAGGAGTGGATGGAGAGAGTCAACAGTTATCCTGGAACCGATCTTCCTGTTTCTGCGATGGTTAATGTTACTGTTAACTGTTCCTGTGGGAGCAGAGAGGTTTCTAAGGATTATGGTTTGTTCATCACATACCCTCTTAGTTCTAAGGACACTTTGGAGTCTATTTCTAAGGATACCATGATTGAGGCTGAGTTGCTGCAGAGGTACAACCCTGGTGTCAATTTCAGCCAAGGAAGTGGTCTTGTTTTTATTCCAGGGAAAGGTTGGATTTTATTTTTCTGTCATGCTTTGGTTTTCTGGTAGTGGAAATTTTGTGCTTGTTCTGAATTTTTCTGTCATTGTTCTAATATACACACATCAAGCCCAATAATCATTTATACAAACACCATTTAAGTAACTTTTGAATTTTATTTCTTTCTAAATTTTGCTCTGTTTTTGTTATAAAAAAATTGTTCTGTTTTAATAATCCGTTTAGAATGTTAAAAAACGTTTGATATGGTATAGTTGGTTTTCATGGATAAGTAATCAATAAATGATACTATTATATTGAACTTTTTAATTGTTTGTTCCTCTATGTTAATGAAAAATGCATTAAATGATGTTTGTTTATATATTGATTGAATGATATGTTTGTATTTTATGTATGATCACTATCGGTTCTTTTATTATTATTTTTTTCTTTAAATTTTGCAGATGAAAATGGATTTTATGTTCCCTTACCCCCTAGGTAAGTTTTATTGTGTTACTCTTCATACTTAGTATTCACAACAATGAAATTGATTTATGTTTGGTTACATCATTATTTCTATTTCCTTTTCCCTCTTGCAGAAAAGGTTTCACCTTCAAACTTATCAGAGAGTTGGCTATATTGATGACTATTTATTTTTGCATGTTGTTCACATTAATCATATGAGAATTCAAAGAAAGCTAAGTGCCTCTAAGATTTAATTTCTATATATATAAGCAGGTCATTTAGCAAGAAGTTTAGGTACAGCTGGAATATCTATTGGAGGATTATGCATGGTTCTGTTATTATTACTTTGTATATATGTTAGATACTTTCGAATGAAGAATGGAGAAGAAAAGTCTAAATTGTCACCAGATGATTCTATGACACCTTCAACTAAAGATGGTATAGTATATGTACAATTTTCATACTCGTCCAAAATACAGTGAATGAAGTTCAACTTGAAACTGGTCTTCTGCTTATTTATTTATAACTCTCGCAGTTGATAAAGATACCAATGGTGATACTGGATCCAGATATATTTGGTTAGACAAATCACCAGAGTTTTCGTACGAAGAACTCGCCAATGCTACAGATAACTTCAGTTTGGCTAAAAAAATTGGTCAAGGTGGTTTTGGTGAGGTCTACTATGGAGAGTTGAGAGGCCAGGTTTGTAATCGTAGCATTGTTAGTTTTACTTTGAAATCAGTCATAAGAGTCTGAAATTACTATTGATTCCCTCAGAGGTGGTTCTAAAATTACTATTGATTCCTCGTAATTTCTCTCACTTTCAATTGTATGTATAAAATCATACCATATACAGGAAAGGTGCTATGTACCAGAATTCATTAAATTTGTTTTAAACTCATTCTAACAAGCATAGTATTTGGAATAATTTTTTCTTGTTGCTAACAATAAATTCCATGTGCCTATTTCAAATTTTATGTTCGTTTGTTAAGTAAGCTGTCTTTAATTACACAGAAAATTGCAATCAAGAAGATGAAGATGCAAGCAACAAGAGAATTTCTTTCTGAACTGAAAGTGTTAACAAGTGTTCATCACCGGAACCTGGTAAAGCATGTTTTGTTTTACCTTTTTTATTATAAAAGTAATTGTTGCTTTATTAACTTTCTTCAGTAACTTTGCTGTTTATATTATATTCTTTAATGTATCAGTAATTTTGTAACCTATATCTATCTATTGTTATGTTCATATAGGTACACTTGATTGGATATTGTGTTGAGGGATTTCTATTCCTTGTGTATGAATACATGGAAAATGGAAACTTAAACCAACATCTACATAATTCAGGTGATATTATTATAAACACATTTTGAATATTTGTTCTTGATGATGTTTCATTGATTTGAATACCATTTGCAGAGAAAGAACCGATAACGTTGTCTACAAGGATGAAAATTGCCCTGGATGTTGCGAGAGGCCTTGAGTATATTCATGATCATTCCATTCCTGTATATATCCATCGTGACATAAAATCAGATAATATTCTGTTAAATGAAAACTTCACTGGCAAGGCATAGTACTAATCCTTTTTTTTTTTTTTTTTTTTTTTTGGGATAACTGTGTGAGAGTGAGATCATATTTTATTCCTATTACAGGTTGCAGATTTTGGATTAACCAAGCTTACTGATGCTGCAAGTTCAGCAGATAACACTGATCATGTGGCAGGCACATTTGGTTACATGCCACCTGAGTATGATGAATTATGCTTCTCTTTTGGTTGATAGATATCTTAGAGGCTATAGTCCACTTCCTTAGTTAAATTTTACCATTCACCTTTGTGTAGAAATGCATACGGACGTATTTCTCGCAAGATAGATGTGTACGCTTTTGGAGTTGTTCTTTATGAACTAATTTCTGCTAAAGCAGCAGTGATCAAGATCGATAAAACCGAGTTCGAGTTGAAGAGCCTTGAGATTAAGACCAATGAATCTATTGATGAGTACAAGAGCCTTGTAGCTTTGGTAATTGATTGTTAATCTCCCACCATTTTTTATTCTCTATTGATGACCCCTCAAAAAAACTAATTAGTACCTTAATATATGTTCATACATTGTGTTCTTTTTAAATTGATATGTATGGCAGTTTGATGAAGTTATGGATCAAACGGGAGATCCTATAGAAGGTCTAAGAAAGCTGGTGGATCCAAGGCTAGGATATAACTATTCAATTGATTCCATTAGCAAGGTATTTATTTATAAATCATAGCCATTTTTTAGTTTCGGATTTTGGTTTTGACGGTTTTATCTTTTTTCCACTGGCAGATGGCAAAGCTTGCCAAGGCTTGCATAAACCGAGATCCGAAACAACGTCCAAAAATGAGAGACCTTGTGGTTTCTCTTATGAAACTGAATTATACTATTGATGATGAAAGTAGGACAGGTAGCGCAGAGTTGAGTCTTGCTGTGGAGCATGATTCAAATTGAAATGAAGAAGTTCCAATGTGAAACTTAATACTATTCTACTATGCACTTGCTGTTGTACAGCTTAATATAAGAGAATGATAGAAAGAAAAAAACAGAAAATGTGGATAGTTGTTTATTGATGTTTGG</TRANSCRIPT_SEQUENCE> </TU> </TIGR> |
| |
Input:String | |
Name:TIGRXML |
<?xml version='1.0' encoding='ISO-8859-1'?> <TIGR> <TU> <FEAT_NAME>752.t00022</FEAT_NAME> <DATE>10-Dec-2004</DATE> <GENE_INFO> <LOCUS>AC123570_22.1</LOCUS> <COM_NAME CURATED="0" IS_PRIMARY="1">LysM domain-containing receptor-like kinase 1-related</COM_NAME> <PUB_COMMENT> </PUB_COMMENT> <IS_PSEUDOGENE>0</IS_PSEUDOGENE> <FUNCT_ANNOT_EVIDENCE TYPE="AUTO"> <ASSIGN_ACC ASSIGN_METHOD="autoBYOB">GB:AAQ73154.1:LysM domain-containing receptor-like kinase 1</ASSIGN_ACC> </FUNCT_ANNOT_EVIDENCE> <DATE>10-Dec-2004</DATE> </GENE_INFO> <COORDSET> <END5>89369</END5> <END3>90965</END3> </COORDSET> <MODEL COMMENT="IMGA|AC123570_22.1 AC123570.7 89369-90965 H EGN_Mt041209 20041210"> <FEAT_NAME>752.m00022</FEAT_NAME> <DATE>10-Dec-2004</DATE> <COORDSET> <END5>89430</END5> <END3>90915</END3> </COORDSET> <MODEL_ATTRIBUTE> <ATTRIBUTE_TYPE METHOD="GES,TMHMM2.0"> <ATT_SCORE DESC="count">1</ATT_SCORE> <ATT_SCORE DESC="coords">219-241</ATT_SCORE> </ATTRIBUTE_TYPE> <ATTRIBUTE_TYPE METHOD="MW,molwt_update.dbi"> <ATT_SCORE DESC="Molecular Weight">31173.11</ATT_SCORE> </ATTRIBUTE_TYPE> <ATTRIBUTE_TYPE METHOD="PI,molwt_update.dbi"> <ATT_SCORE DESC="Isoelectric point">8.3780</ATT_SCORE> </ATTRIBUTE_TYPE> <ATTRIBUTE_TYPE METHOD="SP-HMM,signalP-2.0"> <ATT_SCORE DESC="HMM-position">23</ATT_SCORE> <ATT_SCORE DESC="HMM-prediction">Signal peptide</ATT_SCORE> <ATT_SCORE DESC="HMM-SPprob">0.999</ATT_SCORE> <ATT_SCORE DESC="HMM-SAprob">0.001</ATT_SCORE> <ATT_SCORE DESC="HMM-cleavprob">0.566</ATT_SCORE> </ATTRIBUTE_TYPE> <ATTRIBUTE_TYPE METHOD="SP-NN,signalP-2.0"> <ATT_SCORE DESC="NN-position">23</ATT_SCORE> <ATT_SCORE DESC="NN-cleavsite">ITS-ES</ATT_SCORE> <ATT_SCORE DESC="NN-maxY">0.653</ATT_SCORE> <ATT_SCORE DESC="NN-meanS">0.926</ATT_SCORE> </ATTRIBUTE_TYPE> <ATTRIBUTE_TYPE METHOD="targetP,targetP_update.dbi"> <ATT_SCORE DESC="Location">secreted</ATT_SCORE> <ATT_SCORE DESC="c:m:s:o scores">0.006:0.092:0.930:0.022</ATT_SCORE> <ATT_SCORE DESC="RC-value">1</ATT_SCORE> <ATT_SCORE DESC="network:peplen">plant:150</ATT_SCORE> <ATT_SCORE DESC="c:m:s:o cutoffs">0:0:0:0</ATT_SCORE> </ATTRIBUTE_TYPE> <ATTRIBUTE_TYPE METHOD="EGN_Mt041209"> <ATT_SCORE DESC="IMGA gene call evidence class">H</ATT_SCORE> </ATTRIBUTE_TYPE> </MODEL_ATTRIBUTE> <MODEL_EVIDENCE> <EVIDENCE_TYPE> <SEQUENCE_DB_MATCH> <SEARCH_DB DB_NAME="MENS|MtAA" DB_TYPE="Database of peptides predicted from Medicago truncatula EST-Clusters"> <SEQ_ELEMENT ACCESSION="MtD04912_1_AA" DESCRIPTION="spans 89 percent of the exon" FEAT_TYPE="mth2-33l22.221.1:Exon" METHOD="blastx" SCORE="89"> <ASMBL_COORDS> <COORDSET> <END5>89430</END5> <END3>90066</END3> </COORDSET> </ASMBL_COORDS> </SEQ_ELEMENT> <SEQ_ELEMENT ACCESSION="MtD07324_1_AA" DESCRIPTION="spans 89 percent of the exon" FEAT_TYPE="mth2-33l22.221.1:Exon" METHOD="blastx" SCORE="89"> <ASMBL_COORDS> <COORDSET> <END5>89430</END5> <END3>90066</END3> </COORDSET> </ASMBL_COORDS> </SEQ_ELEMENT> </SEARCH_DB> <SEARCH_DB DB_NAME="ProDom" DB_TYPE="Protein Domain database (subset of families with at least two domains)"> <SEQ_ELEMENT ACCESSION="pd:PD023767;sp:Q9LVE3:Q9LVE3_ARATH" DESCRIPTION="spans 47 percent of the exon" FEAT_TYPE="mth2-33l22.221.1:Exon" METHOD="blastx" SCORE="47"> <ASMBL_COORDS> <COORDSET> <END5>89430</END5> <END3>90066</END3> </COORDSET> </ASMBL_COORDS> </SEQ_ELEMENT> </SEARCH_DB> </SEQUENCE_DB_MATCH> </EVIDENCE_TYPE> </MODEL_EVIDENCE> <EXON> <FEAT_NAME>752.e00090</FEAT_NAME> <DATE>Dec 10 2004 4:00PM</DATE> <COORDSET> <END5>89369</END5> <END3>90066</END3> </COORDSET> <CDS> <FEAT_NAME>752.c00090</FEAT_NAME> <DATE>Dec 10 2004 4:00PM</DATE> <COORDSET> <END5>89430</END5> <END3>90066</END3> </COORDSET> </CDS> <UTRS> <LEFT_UTR> <COORDSET> <END5>89369</END5> <END3>89429</END3> </COORDSET> </LEFT_UTR> </UTRS> </EXON> <EXON> <FEAT_NAME>752.e00091</FEAT_NAME> <DATE>Dec 10 2004 4:00PM</DATE> <COORDSET> <END5>90713</END5> <END3>90965</END3> </COORDSET> <CDS> <FEAT_NAME>752.c00091</FEAT_NAME> <DATE>Dec 10 2004 4:00PM</DATE> <COORDSET> <END5>90713</END5> <END3>90915</END3> </COORDSET> </CDS> <UTRS> <RIGHT_UTR> <COORDSET> <END5>90916</END5> <END3>90965</END3> </COORDSET> </RIGHT_UTR> </UTRS> </EXON> <CDS_SEQUENCE>ATGAAACCAATCATCAAATTCAGATTATCACTTTTATTCTTGTTACTTGTCTCGCAATCCATCACTTCAGAATCAAAATGTAACAAAACTTGTGACTTAGCTTTAGCTTCCTATTATATAAGGCCAGGTACAACCTTGGCAAATATTTCAAAGGTCATGCAATCCAATGTTGTTTCAAAAGCTGAAGATATTTCCATCTACAACATTTACACAATACTAAGCGTTGATAGTGTCCAAGTCTATACAAGATTGAATGTTCCATTCCCTTGTGATTGCATCAATGATGAGTTTCTTGGTCACACATTTCTCTACAAGCTTCGCCATGGAGACTCCTATGCTTCGATTGCTACGACGACTTTTGGCAATTTGGTCACCGAGGAATGGATCGAGAGAGTCAATGTTTATCCTCGAACCTATGTTCCTGATTCTGTCATGATTAATGTCACTGTTAATTGTTCCTGTGGGAACGGAGAGGTTTCAAAAGATTATGGTTTGTTCATTACATATCCTCTTAGACCTGACGACACTTTGGAATCCATTGCTAAGTATACCAAGGTTAAGGGTGAGTTGCTGCAGAGGTACAACCCTGGTGTCAATTTCAGCCAAGGAAGGGGTCTTGTTTATATTCCAGGGAAAGGTCACTTAGCTAGAAGTTTAGTTGCTGCTGGAATATGTATTCGAGGAGTATGCATGGTTCTGCTATTAGCAATTTGTATATATGTTAGATACTTTCGCAAGAAGAATGGAGAAGAAGAGTCTAAATTGCCACCAGAAGATTCAATGTCACCTTCAACTAAAGATGGTATATGTACAACTTTCGTACTCAAATTCCTTGCATGA</CDS_SEQUENCE> <PROTEIN_SEQUENCE>MKPIIKFRLSLLFLLLVSQSITSESKCNKTCDLALASYYIRPGTTLANISKVMQSNVVSKAEDISIYNIYTILSVDSVQVYTRLNVPFPCDCINDEFLGHTFLYKLRHGDSYASIATTTFGNLVTEEWIERVNVYPRTYVPDSVMINVTVNCSCGNGEVSKDYGLFITYPLRPDDTLESIAKYTKVKGELLQRYNPGVNFSQGRGLVYIPGKGHLARSLVAAGICIRGVCMVLLLAICIYVRYFRKKNGEEESKLPPEDSMSPSTKDGICTTFVLKFLA</PROTEIN_SEQUENCE> </MODEL> <TRANSCRIPT_SEQUENCE>TCCTAACACCCTTTTGCATATTTATTCAACACATCCAAATTCTTATTCTGTGTGTTACACAATGAAACCAATCATCAAATTCAGATTATCACTTTTATTCTTGTTACTTGTCTCGCAATCCATCACTTCAGAATCAAAATGTAACAAAACTTGTGACTTAGCTTTAGCTTCCTATTATATAAGGCCAGGTACAACCTTGGCAAATATTTCAAAGGTCATGCAATCCAATGTTGTTTCAAAAGCTGAAGATATTTCCATCTACAACATTTACACAATACTAAGCGTTGATAGTGTCCAAGTCTATACAAGATTGAATGTTCCATTCCCTTGTGATTGCATCAATGATGAGTTTCTTGGTCACACATTTCTCTACAAGCTTCGCCATGGAGACTCCTATGCTTCGATTGCTACGACGACTTTTGGCAATTTGGTCACCGAGGAATGGATCGAGAGAGTCAATGTTTATCCTCGAACCTATGTTCCTGATTCTGTCATGATTAATGTCACTGTTAATTGTTCCTGTGGGAACGGAGAGGTTTCAAAAGATTATGGTTTGTTCATTACATATCCTCTTAGACCTGACGACACTTTGGAATCCATTGCTAAGTATACCAAGGTTAAGGGTGAGTTGCTGCAGAGGTACAACCCTGGTGTCAATTTCAGCCAAGGAAGGGGTCTTGTTTATATTCCAGGGAAAGGTTACATTTTTTATTTTACTGATATGGAAAAAACTACACTATATTTGTTAATGTATATACAGTGTAAACATGTAAAATTTAAATAGAAGGCAAAATTGAAATTTGTCAAAAATATATTAATTGCTTGACCATATTTTCCAATTTATGCTACAGGTAGAATGAAGTTGATGACCATGTTTTATTAGTGAACCTGAGACTCTAGTTTATAATGGATGAGTAATCAATAAATGATAATATTACATCTAACTTTTTAATTGTTTGTTCCTCTATGTTATTGAAAAATGCATTAAGTGATGTTTTTTTGTTTATTGATGGATCTGTTTGTATTTTATGTATGACTATTTATTCTTTTGTTTTATTTTTTATTCCTTTAATTTTGCAGATGAAAATGGAGTTTATGTTCCCTTGCCCTCTAGGTAAGTTTCATTGTGTTAGCCTTACCTTTCATACTTATTACTCACAGCAATGAAAATTCATTTTTTTCCATTTCGTTTCCCTTCTTGCAGAAAAGCAGGTTTCACCTTCAAACTTACCAGAGAATTGGCTATATTGATGACTATTTATTTTTGCATGTTCATAGTCATATGAGAATTCAAAGAAAGCTAAGTGCCTCTCTGAACTTTAATTTCTATATATATATAATCAGGTCACTTAGCTAGAAGTTTAGTTGCTGCTGGAATATGTATTCGAGGAGTATGCATGGTTCTGCTATTAGCAATTTGTATATATGTTAGATACTTTCGCAAGAAGAATGGAGAAGAAGAGTCTAAATTGCCACCAGAAGATTCAATGTCACCTTCAACTAAAGATGGTATATGTACAACTTTCGTACTCAAATTCCTTGCATGACCCTTACCTCTTAAATATAGTGAATGAACTGTTCCATTATTCATGAGCTC</TRANSCRIPT_SEQUENCE> </TU> </TIGR> |
| |
Input:String | |
Name:TIGRXML |
<?xml version='1.0' encoding='ISO-8859-1'?> <TIGR> <TU> <FEAT_NAME>802.t00002</FEAT_NAME> <DATE>10-Dec-2004</DATE> <GENE_INFO> <LOCUS>AC126779_2.1</LOCUS> <COM_NAME CURATED="0" IS_PRIMARY="1">Protein kinase-like; Peptidoglycan-binding LysM; Serine/threonine protein kinase; Tyrosine protein kinase</COM_NAME> <PUB_COMMENT> </PUB_COMMENT> <IS_PSEUDOGENE>0</IS_PSEUDOGENE> <FUNCT_ANNOT_EVIDENCE TYPE="CURATED"/> <DATE>10-Dec-2004</DATE> </GENE_INFO> <COORDSET> <END5>15640</END5> <END3>17737</END3> </COORDSET> <MODEL COMMENT="IMGA|AC126779_2.1 AC126779.18 15640-17737 E EGN_Mt041209 20041210"> <FEAT_NAME>802.m00002</FEAT_NAME> <CDNA_SUPPORT> <ACCESSION>spans 29 percent of the model length</ACCESSION> <ACCESSION ANNOT_INCORP="1" DBXREF="MENS|MtD20757_GC" IS_FLI="0" UNIQUE_TO_ISOFORM="1">cDNA support spans 29 percent of the model</ACCESSION> <ACCESSION ANNOT_INCORP="1" DBXREF="MtEST|BG587505" IS_FLI="0" UNIQUE_TO_ISOFORM="1">cDNA support spans 29 percent of the model</ACCESSION> </CDNA_SUPPORT> <DATE>10-Dec-2004</DATE> <COORDSET> <END5>15667</END5> <END3>17580</END3> </COORDSET> <MODEL_ATTRIBUTE> <ATTRIBUTE_TYPE METHOD="GES,TMHMM2.0"> <ATT_SCORE DESC="count">2</ATT_SCORE> <ATT_SCORE DESC="coords">4-26:272-294</ATT_SCORE> </ATTRIBUTE_TYPE> <ATTRIBUTE_TYPE METHOD="MW,molwt_update.dbi"> <ATT_SCORE DESC="Molecular Weight">71358.64</ATT_SCORE> </ATTRIBUTE_TYPE> <ATTRIBUTE_TYPE METHOD="PI,molwt_update.dbi"> <ATT_SCORE DESC="Isoelectric point">7.0831</ATT_SCORE> </ATTRIBUTE_TYPE> <ATTRIBUTE_TYPE METHOD="SP-HMM,signalP-2.0"> <ATT_SCORE DESC="HMM-position">28</ATT_SCORE> <ATT_SCORE DESC="HMM-prediction">Signal peptide</ATT_SCORE> <ATT_SCORE DESC="HMM-SPprob">0.954</ATT_SCORE> <ATT_SCORE DESC="HMM-SAprob">0.035</ATT_SCORE> <ATT_SCORE DESC="HMM-cleavprob">0.892</ATT_SCORE> </ATTRIBUTE_TYPE> <ATTRIBUTE_TYPE METHOD="SP-NN,signalP-2.0"> <ATT_SCORE DESC="NN-position">28</ATT_SCORE> <ATT_SCORE DESC="NN-cleavsite">ILG-QQ</ATT_SCORE> <ATT_SCORE DESC="NN-maxY">0.672</ATT_SCORE> <ATT_SCORE DESC="NN-meanS">0.840</ATT_SCORE> </ATTRIBUTE_TYPE> <ATTRIBUTE_TYPE METHOD="targetP,targetP_update.dbi"> <ATT_SCORE DESC="Location">secreted</ATT_SCORE> <ATT_SCORE DESC="c:m:s:o scores">0.006:0.016:0.922:0.063</ATT_SCORE> <ATT_SCORE DESC="RC-value">1</ATT_SCORE> <ATT_SCORE DESC="network:peplen">plant:150</ATT_SCORE> <ATT_SCORE DESC="c:m:s:o cutoffs">0:0:0:0</ATT_SCORE> </ATTRIBUTE_TYPE> <ATTRIBUTE_TYPE METHOD="EGN_Mt041209"> <ATT_SCORE DESC="IMGA gene call evidence class">E</ATT_SCORE> </ATTRIBUTE_TYPE> </MODEL_ATTRIBUTE> <MODEL_EVIDENCE> <EVIDENCE_TYPE> <SEQUENCE_DB_MATCH> <SEARCH_DB DB_NAME="MENS|MtAA" DB_TYPE="Database of peptides predicted from Medicago truncatula EST-Clusters"> <SEQ_ELEMENT ACCESSION="MtC93221_1_AA" DESCRIPTION="spans 32 percent of the exon" FEAT_TYPE="mth2-34m14.21.1:Exon" METHOD="blastx" SCORE="32"> <ASMBL_COORDS> <COORDSET> <END5>15667</END5> <END3>17580</END3> </COORDSET> </ASMBL_COORDS> </SEQ_ELEMENT> </SEARCH_DB> <SEARCH_DB DB_NAME="ProDom" DB_TYPE="Protein Domain database (subset of families with at least two domains)"> <SEQ_ELEMENT ACCESSION="pd:PD000001;sp:O64825:O64825_ARATH" DESCRIPTION="spans 35 percent of the exon" FEAT_TYPE="mth2-34m14.21.1:Exon" METHOD="blastx" SCORE="35"> <ASMBL_COORDS> <COORDSET> <END5>15667</END5> <END3>17580</END3> </COORDSET> </ASMBL_COORDS> </SEQ_ELEMENT> </SEARCH_DB> </SEQUENCE_DB_MATCH> </EVIDENCE_TYPE> </MODEL_EVIDENCE> <EXON> <FEAT_NAME>802.e00005</FEAT_NAME> <DATE>Dec 10 2004 4:50PM</DATE> <COORDSET> <END5>15640</END5> <END3>17737</END3> </COORDSET> <CDS> <FEAT_NAME>802.c00005</FEAT_NAME> <DATE>Dec 10 2004 4:50PM</DATE> <COORDSET> <END5>15667</END5> <END3>17580</END3> </COORDSET> </CDS> <UTRS> <LEFT_UTR> <COORDSET> <END5>15640</END5> <END3>15666</END3> </COORDSET> </LEFT_UTR> <RIGHT_UTR> <COORDSET> <END5>17581</END5> <END3>17737</END3> </COORDSET> </RIGHT_UTR> </UTRS> </EXON> <CDS_SEQUENCE>ATGCATCTCTTTCCCTTCATCCCTTTTTTCATTTTCAATCTCTTCTTCTTCTTCTTCGTCAGCAACATCTCCATCATCCTAGGACAACAACCTTATATTGGTTTAGCAACAAATGCATGTCCACGAAAAGGCGATTCAAAATCAATCCGAGGTTACACATGTAACGGCAAAACTCAAACATGCCAAGCATACCTCACCTTCAGAACTCAACCAATTTACTCCTCAGTTTCAACAATATCATCATTACTAGGCTCAAATCCATCTCAACTCGCCGAAATAAACTCCGTTTCTTTAAACGAAACATTCGAAACAAACAAAATGGTAATTGTTCCTGTCAATTGTTCTTGTTCTGGTAACTATTATCAAGCAAATACATCCTATGTTTTTCAAAACACAGACACTTATTTTATAGTTGCTAACAACACTTTTGAAGGACTTTCAACATGTCAAGCTTTGATGCATGAAAATCATAATCCTGGTGATGTATATCCTGGTAGAAAACTACTTGTTCCTCTTAGATGTGCTTGTCCTACAAAGAATCAAACTCAGAAAAACATAAAGTATCTTTTGAGTTATTTGGTTGATTGGGGTGATTCTGTTTCATTCATTAGTGATAAATTTGGTGTTAACTTTAGAACCACTCTTGAAGCTAATACACTTTCTTTAACACAATCTACAATTTATCCCTTTACAACACTTCTTGTTCCTCTTTTTGATAAGCCCTCAAGTTCTCAAATTCAAACACATCATTCTCCTTCATCATCCCCACCTTTATCTTCTTCTTCTTCGACCGACAAAAAATCGAAAAAAACTTGGGTTTATGTTGTTGTTGGAGTACTTGGAGGAGTTGTAATTGTAGCTTTAATATTATTTTTATATGCTTTCATTTCCTTCAAAAAGGGTAAAAAGAAAAATGATTTTTTGGTGAGTGTTTCTGAAAGTACTATTTTTGAGGAAAAAGAGAAACCAATGAAGAAAGAAGATGAAAAATTGTCTGAGATTATATGTGGTATAGCTCAATCTTTCAAAGTGTATGATTTTGAGGAAATTAAGGTTGCAACTGATAATTTTAGTCCAAGTTGTCGGGTTAAAGGAACTGTTTATCGCGGCCTTATTAAAGGCGATTTGGCTGCGATTAAGAAGACAGAAGGAGATGTTTCAAAAGAGATACAAATTCTAAACAAAGTTAACCATTCCAATGTTATTCGTCTTTCCGGTGTTAGCTTCAATCAAGGACATTGGTACCTTGTTTATGAGTATGCTGCTAATGGAGCATTAAGTGATTGGTTATTTTCTAACAAAAAAATGGATGATGGAAATATTCTGAGTTGGATTCGGAGAATAAAGATTGCATTAGATGTGGCAATAGGAGTTGAATATCTTCATAGTTTCACTTCTCCTCCACATATTCATAAGGATCTAAAGTGTAGTAACATACTTCTTGATAGTGATTTTAAAGCAAAGGTTGCAAATTTAAGGCATGTAAGGTGTGTGGAAGAAGTTGAAAATGATGAAGAATTTGTTGCTACAAGACATATTGTTGGGACAAGAGGTTACATGGCTCCTGAGTATTTGGAAAATGGTCTTGTTTCTACAAAGCTTGATGTGTATGCATTTGGTATTTTGATGTTGGAAATTATTACAGGAAAAGAGGTTGGTTTTATGATATCAAAAGATAATGAGAATTTGTTGGATGTTTTGAGTGGAATACTTGGTGAGAAAAGTGGTGATGAGAAGTTGAAGGAGTTTATGGATCCTTCATTGCAAGGAAATTATCCATTTGAACTTGCTATGTTTGTGATTGAAATTATTCAGAATTGTTTAAACAAGGATCCAGGAAATAGACCTGCTATGGATGAGATTGTACCAGTTTTGTCAAGAACATTGAATTCTTCATTGAGTTGGGAAATGTAA</CDS_SEQUENCE> <PROTEIN_SEQUENCE>MHLFPFIPFFIFNLFFFFFVSNISIILGQQPYIGLATNACPRKGDSKSIRGYTCNGKTQTCQAYLTFRTQPIYSSVSTISSLLGSNPSQLAEINSVSLNETFETNKMVIVPVNCSCSGNYYQANTSYVFQNTDTYFIVANNTFEGLSTCQALMHENHNPGDVYPGRKLLVPLRCACPTKNQTQKNIKYLLSYLVDWGDSVSFISDKFGVNFRTTLEANTLSLTQSTIYPFTTLLVPLFDKPSSSQIQTHHSPSSSPPLSSSSSTDKKSKKTWVYVVVGVLGGVVIVALILFLYAFISFKKGKKKNDFLVSVSESTIFEEKEKPMKKEDEKLSEIICGIAQSFKVYDFEEIKVATDNFSPSCRVKGTVYRGLIKGDLAAIKKTEGDVSKEIQILNKVNHSNVIRLSGVSFNQGHWYLVYEYAANGALSDWLFSNKKMDDGNILSWIRRIKIALDVAIGVEYLHSFTSPPHIHKDLKCSNILLDSDFKAKVANLRHVRCVEEVENDEEFVATRHIVGTRGYMAPEYLENGLVSTKLDVYAFGILMLEIITGKEVGFMISKDNENLLDVLSGILGEKSGDEKLKEFMDPSLQGNYPFELAMFVIEIIQNCLNKDPGNRPAMDEIVPVLSRTLNSSLSWEM</PROTEIN_SEQUENCE> </MODEL> <TRANSCRIPT_SEQUENCE>ACACCCCATTCTCTGCAAGCAATAACAATGCATCTCTTTCCCTTCATCCCTTTTTTCATTTTCAATCTCTTCTTCTTCTTCTTCGTCAGCAACATCTCCATCATCCTAGGACAACAACCTTATATTGGTTTAGCAACAAATGCATGTCCACGAAAAGGCGATTCAAAATCAATCCGAGGTTACACATGTAACGGCAAAACTCAAACATGCCAAGCATACCTCACCTTCAGAACTCAACCAATTTACTCCTCAGTTTCAACAATATCATCATTACTAGGCTCAAATCCATCTCAACTCGCCGAAATAAACTCCGTTTCTTTAAACGAAACATTCGAAACAAACAAAATGGTAATTGTTCCTGTCAATTGTTCTTGTTCTGGTAACTATTATCAAGCAAATACATCCTATGTTTTTCAAAACACAGACACTTATTTTATAGTTGCTAACAACACTTTTGAAGGACTTTCAACATGTCAAGCTTTGATGCATGAAAATCATAATCCTGGTGATGTATATCCTGGTAGAAAACTACTTGTTCCTCTTAGATGTGCTTGTCCTACAAAGAATCAAACTCAGAAAAACATAAAGTATCTTTTGAGTTATTTGGTTGATTGGGGTGATTCTGTTTCATTCATTAGTGATAAATTTGGTGTTAACTTTAGAACCACTCTTGAAGCTAATACACTTTCTTTAACACAATCTACAATTTATCCCTTTACAACACTTCTTGTTCCTCTTTTTGATAAGCCCTCAAGTTCTCAAATTCAAACACATCATTCTCCTTCATCATCCCCACCTTTATCTTCTTCTTCTTCGACCGACAAAAAATCGAAAAAAACTTGGGTTTATGTTGTTGTTGGAGTACTTGGAGGAGTTGTAATTGTAGCTTTAATATTATTTTTATATGCTTTCATTTCCTTCAAAAAGGGTAAAAAGAAAAATGATTTTTTGGTGAGTGTTTCTGAAAGTACTATTTTTGAGGAAAAAGAGAAACCAATGAAGAAAGAAGATGAAAAATTGTCTGAGATTATATGTGGTATAGCTCAATCTTTCAAAGTGTATGATTTTGAGGAAATTAAGGTTGCAACTGATAATTTTAGTCCAAGTTGTCGGGTTAAAGGAACTGTTTATCGCGGCCTTATTAAAGGCGATTTGGCTGCGATTAAGAAGACAGAAGGAGATGTTTCAAAAGAGATACAAATTCTAAACAAAGTTAACCATTCCAATGTTATTCGTCTTTCCGGTGTTAGCTTCAATCAAGGACATTGGTACCTTGTTTATGAGTATGCTGCTAATGGAGCATTAAGTGATTGGTTATTTTCTAACAAAAAAATGGATGATGGAAATATTCTGAGTTGGATTCGGAGAATAAAGATTGCATTAGATGTGGCAATAGGAGTTGAATATCTTCATAGTTTCACTTCTCCTCCACATATTCATAAGGATCTAAAGTGTAGTAACATACTTCTTGATAGTGATTTTAAAGCAAAGGTTGCAAATTTAAGGCATGTAAGGTGTGTGGAAGAAGTTGAAAATGATGAAGAATTTGTTGCTACAAGACATATTGTTGGGACAAGAGGTTACATGGCTCCTGAGTATTTGGAAAATGGTCTTGTTTCTACAAAGCTTGATGTGTATGCATTTGGTATTTTGATGTTGGAAATTATTACAGGAAAAGAGGTTGGTTTTATGATATCAAAAGATAATGAGAATTTGTTGGATGTTTTGAGTGGAATACTTGGTGAGAAAAGTGGTGATGAGAAGTTGAAGGAGTTTATGGATCCTTCATTGCAAGGAAATTATCCATTTGAACTTGCTATGTTTGTGATTGAAATTATTCAGAATTGTTTAAACAAGGATCCAGGAAATAGACCTGCTATGGATGAGATTGTACCAGTTTTGTCAAGAACATTGAATTCTTCATTGAGTTGGGAAATGTAAGTGAATGTTCCTAGAAACTAAGGGTTAAGCAGGGCCTCTTGATGTTGAAGAAGTTGAAAAAGGATACTTAGATCAGTCAATGGTATTATGTGTTTGTTAAGTTCTTGTTTTGTTTGTCAATATGTCATATGTTAGTACTAATCTATGAAGCATGGAT</TRANSCRIPT_SEQUENCE> </TU> </TIGR> |
| |
Input:String | |
Name:TIGRXML |
<?xml version='1.0' encoding='ISO-8859-1'?> <TIGR> <TU> <FEAT_NAME>802.t00003</FEAT_NAME> <DATE>10-Dec-2004</DATE> <GENE_INFO> <LOCUS>AC126779_3.1</LOCUS> <COM_NAME CURATED="0" IS_PRIMARY="1">Protein kinase; Protein kinase-like; Peptidoglycan-binding LysM; Serine/threonine protein kinase; Tyrosine protein kinase; Tyrosine protein kinase, active site</COM_NAME> <PUB_COMMENT> </PUB_COMMENT> <IS_PSEUDOGENE>0</IS_PSEUDOGENE> <FUNCT_ANNOT_EVIDENCE TYPE="CURATED"/> <DATE>10-Dec-2004</DATE> </GENE_INFO> <COORDSET> <END5>24410</END5> <END3>22366</END3> </COORDSET> <MODEL COMMENT="IMGA|AC126779_3.1 AC126779.18 24410-22366 E EGN_Mt041209 20041210"> <FEAT_NAME>802.m00003</FEAT_NAME> <CDNA_SUPPORT> <ACCESSION>spans 29 percent of the model length</ACCESSION> <ACCESSION ANNOT_INCORP="1" DBXREF="MENS|MtD11480_GC" IS_FLI="0" UNIQUE_TO_ISOFORM="1">cDNA support spans 29 percent of the model</ACCESSION> <ACCESSION ANNOT_INCORP="1" DBXREF="MtEST|BE204912" IS_FLI="0" UNIQUE_TO_ISOFORM="1">cDNA support spans 29 percent of the model</ACCESSION> </CDNA_SUPPORT> <DATE>10-Dec-2004</DATE> <COORDSET> <END5>24375</END5> <END3>22588</END3> </COORDSET> <MODEL_ATTRIBUTE> <ATTRIBUTE_TYPE METHOD="GES,TMHMM2.0"> <ATT_SCORE DESC="count">2</ATT_SCORE> <ATT_SCORE DESC="coords">10-32:247-269</ATT_SCORE> </ATTRIBUTE_TYPE> <ATTRIBUTE_TYPE METHOD="MW,molwt_update.dbi"> <ATT_SCORE DESC="Molecular Weight">66013.82</ATT_SCORE> </ATTRIBUTE_TYPE> <ATTRIBUTE_TYPE METHOD="PI,molwt_update.dbi"> <ATT_SCORE DESC="Isoelectric point">7.6472</ATT_SCORE> </ATTRIBUTE_TYPE> <ATTRIBUTE_TYPE METHOD="SP-HMM,signalP-2.0"> <ATT_SCORE DESC="HMM-position">27</ATT_SCORE> <ATT_SCORE DESC="HMM-prediction">Signal peptide</ATT_SCORE> <ATT_SCORE DESC="HMM-SPprob">1.000</ATT_SCORE> <ATT_SCORE DESC="HMM-SAprob">0.000</ATT_SCORE> <ATT_SCORE DESC="HMM-cleavprob">0.990</ATT_SCORE> </ATTRIBUTE_TYPE> <ATTRIBUTE_TYPE METHOD="SP-NN,signalP-2.0"> <ATT_SCORE DESC="NN-position">27</ATT_SCORE> <ATT_SCORE DESC="NN-cleavsite">ISA-QP</ATT_SCORE> <ATT_SCORE DESC="NN-maxY">0.881</ATT_SCORE> <ATT_SCORE DESC="NN-meanS">0.924</ATT_SCORE> </ATTRIBUTE_TYPE> <ATTRIBUTE_TYPE METHOD="targetP,targetP_update.dbi"> <ATT_SCORE DESC="Location">secreted</ATT_SCORE> <ATT_SCORE DESC="c:m:s:o scores">0.027:0.009:0.973:0.016</ATT_SCORE> <ATT_SCORE DESC="RC-value">1</ATT_SCORE> <ATT_SCORE DESC="network:peplen">plant:150</ATT_SCORE> <ATT_SCORE DESC="c:m:s:o cutoffs">0:0:0:0</ATT_SCORE> </ATTRIBUTE_TYPE> <ATTRIBUTE_TYPE METHOD="EGN_Mt041209"> <ATT_SCORE DESC="IMGA gene call evidence class">E</ATT_SCORE> </ATTRIBUTE_TYPE> </MODEL_ATTRIBUTE> <MODEL_EVIDENCE> <EVIDENCE_TYPE> <SEQUENCE_DB_MATCH> <SEARCH_DB DB_NAME="MENS|MtAA" DB_TYPE="Database of peptides predicted from Medicago truncatula EST-Clusters"> <SEQ_ELEMENT ACCESSION="MtD11480_1_AA" DESCRIPTION="spans 31 percent of the exon" FEAT_TYPE="mth2-34m14.31.1:Exon" METHOD="blastx" SCORE="31"> <ASMBL_COORDS> <COORDSET> <END5>24375</END5> <END3>22588</END3> </COORDSET> </ASMBL_COORDS> </SEQ_ELEMENT> </SEARCH_DB> <SEARCH_DB DB_NAME="ProDom" DB_TYPE="Protein Domain database (subset of families with at least two domains)"> <SEQ_ELEMENT ACCESSION="pd:PD000001;sp:Q8RYS1:Q8RYS1_EEEEE" DESCRIPTION="spans 27 percent of the exon" FEAT_TYPE="mth2-34m14.31.1:Exon" METHOD="blastx" SCORE="27"> <ASMBL_COORDS> <COORDSET> <END5>24375</END5> <END3>22588</END3> </COORDSET> </ASMBL_COORDS> </SEQ_ELEMENT> </SEARCH_DB> </SEQUENCE_DB_MATCH> </EVIDENCE_TYPE> </MODEL_EVIDENCE> <EXON> <FEAT_NAME>802.e00006</FEAT_NAME> <DATE>Dec 10 2004 4:50PM</DATE> <COORDSET> <END5>24410</END5> <END3>22366</END3> </COORDSET> <CDS> <FEAT_NAME>802.c00006</FEAT_NAME> <DATE>Dec 10 2004 4:50PM</DATE> <COORDSET> <END5>24375</END5> <END3>22588</END3> </COORDSET> </CDS> <UTRS> <LEFT_UTR> <COORDSET> <END5>24410</END5> <END3>24376</END3> </COORDSET> </LEFT_UTR> <RIGHT_UTR> <COORDSET> <END5>22587</END5> <END3>22366</END3> </COORDSET> </RIGHT_UTR> </UTRS> </EXON> <CDS_SEQUENCE>ATGTCTGCCTTCTTTCTTCCTTCTAGTTCTCATGCTCTTTTTCTTGTCCTCATGTTGTTTTTTCTCACTAACATCTCAGCTCAACCACTATATATAAGTGAAACAAACTTTACATGCCCTGTGGATTCTCCTCCTTCATGTGAAACCTATGTAGCATACAGAGCTCAGTCTCCAAATTTTTTGAGCCTATCTAACATATCTGATATTTTTAATTTGAGTCCTTTACGCATTGCAAAAGCCAGTAACATAGAAGCCGAGGATAAGAAGCTGATTCCAGATCAACTGTTACTAGTACCTGTAACTTGTGGTTGCACTAAAAATCACTCTTTCGCGAATATCACCTACTCAATCAAGCAAGGTGACAACTTCTTCATACTTTCAATCACTTCATACCAGAATCTCACCAATTATCTTGAATTTAAAAATTTCAACCCCAATCTAAGTCCAACTCTATTGCCACTAGACACCAAAGTTTCAGTCCCTTTATTCTGCAAGTGCCCTTCAAAGAATCAATTGAACAAAGGAATAAAGTATCTTATTACTTATGTGTGGCAGGATAATGACAATGTTACCCTTGTTAGTTCAAAGTTTGGTGCATCACAAGTTGAAATGTTAGCTGAAAACAATCATAACTTCACTGCTTCAACCAACCGTTCAGTTTTGATCCCTGTGACAAGTTTACCAAAACTTGATCAACCATCTTCAAATGGAAGAAAAAGCAGCAGTCAAAATCTGGCTCTTATAATTGGTATCAGCCTAGGAAGTGCTTTTTTCATTTTAGTTTTAACACTATCACTTGTGTACGTATATTGTCTCAAAATGAAGAGATTGAATAGAAGTACTTCATCGTCCGAGACTGCAGATAAGTTACTTTCAGGTGTTTCAGGTTATGTAAGCAAGCCAACAATGTATGAAATTGATGCAATCATGGAAGGTACAACGAATCTGAGTGACAATTGTAAGATTGGTGAATCAGTTTACAAGGCTAATATAGATGGTAGAGTTTTAGCAGTGAAAAAAATCAAAAAAGATGCTTCAGAGGAGCTGAAAATTCTGCAGAAGGTAAACCATGGAAATCTTGTGAAACTAATGGGTGTGTCTTCTGACAATGATGGAAACTGTTTTCTGGTCTATGAGTATGCTGAAAATGGATCACTTGAAGAGTGGTTGTTCTCGGAATCTTCGAAAACTTCAAACTCGGTGGTTTCGCTTACATGGTCTCAGAGAATAACCATTGCCATGGATGTTGCAATCGGTCTGCAATACATGCATGAACATACTTATCCACGAATAATCCACAGAGACATCACAACAAGTAATATCCTTCTTGGCTCAAATTTTAAGGCCAAGATAGCGAATTTCGGGATGGCTAGAACTTCAACCAACTCAATGATGCCGAAAATTGATGTTTTCGCTTTTGGGGTGGTTCTAATAGAGTTGTTAACTGGCAAGAAAGCTATGACAACTAAAGAAAATGGTGAGGTTGTTATTCTGTGGAAGGATTTTTGGAAGATTTTTGATCTTGAAGGGAATAGAGAAGAGAGGTTAAGAAAATGGATGGATCCTAAGTTAGAGAGTTTTTATCCTATAGATAATGCTCTAAGTTTGGCTTCTTTGGCAGTAAATTGCACTGCTGATAAATCATTGTCTAGACCAACCATTGCAGAAATTGTTCTTTGTCTTTCTCTTCTCAACCAACCATCATCTGAACCAATGTTAGAAAGATCCTTGACATCTGGTTTAGATGCTGAAGCTACTCATGTTGTTACTTCTGTAATAGCTCGTTAA</CDS_SEQUENCE> <PROTEIN_SEQUENCE>MSAFFLPSSSHALFLVLMLFFLTNISAQPLYISETNFTCPVDSPPSCETYVAYRAQSPNFLSLSNISDIFNLSPLRIAKASNIEAEDKKLIPDQLLLVPVTCGCTKNHSFANITYSIKQGDNFFILSITSYQNLTNYLEFKNFNPNLSPTLLPLDTKVSVPLFCKCPSKNQLNKGIKYLITYVWQDNDNVTLVSSKFGASQVEMLAENNHNFTASTNRSVLIPVTSLPKLDQPSSNGRKSSSQNLALIIGISLGSAFFILVLTLSLVYVYCLKMKRLNRSTSSSETADKLLSGVSGYVSKPTMYEIDAIMEGTTNLSDNCKIGESVYKANIDGRVLAVKKIKKDASEELKILQKVNHGNLVKLMGVSSDNDGNCFLVYEYAENGSLEEWLFSESSKTSNSVVSLTWSQRITIAMDVAIGLQYMHEHTYPRIIHRDITTSNILLGSNFKAKIANFGMARTSTNSMMPKIDVFAFGVVLIELLTGKKAMTTKENGEVVILWKDFWKIFDLEGNREERLRKWMDPKLESFYPIDNALSLASLAVNCTADKSLSRPTIAEIVLCLSLLNQPSSEPMLERSLTSGLDAEATHVVTSVIAR</PROTEIN_SEQUENCE> </MODEL> <TRANSCRIPT_SEQUENCE>TCTCTTCCCCTCATAATTTGCATTTCCTCACAACAATGTCTGCCTTCTTTCTTCCTTCTAGTTCTCATGCTCTTTTTCTTGTCCTCATGTTGTTTTTTCTCACTAACATCTCAGCTCAACCACTATATATAAGTGAAACAAACTTTACATGCCCTGTGGATTCTCCTCCTTCATGTGAAACCTATGTAGCATACAGAGCTCAGTCTCCAAATTTTTTGAGCCTATCTAACATATCTGATATTTTTAATTTGAGTCCTTTACGCATTGCAAAAGCCAGTAACATAGAAGCCGAGGATAAGAAGCTGATTCCAGATCAACTGTTACTAGTACCTGTAACTTGTGGTTGCACTAAAAATCACTCTTTCGCGAATATCACCTACTCAATCAAGCAAGGTGACAACTTCTTCATACTTTCAATCACTTCATACCAGAATCTCACCAATTATCTTGAATTTAAAAATTTCAACCCCAATCTAAGTCCAACTCTATTGCCACTAGACACCAAAGTTTCAGTCCCTTTATTCTGCAAGTGCCCTTCAAAGAATCAATTGAACAAAGGAATAAAGTATCTTATTACTTATGTGTGGCAGGATAATGACAATGTTACCCTTGTTAGTTCAAAGTTTGGTGCATCACAAGTTGAAATGTTAGCTGAAAACAATCATAACTTCACTGCTTCAACCAACCGTTCAGTTTTGATCCCTGTGACAAGTTTACCAAAACTTGATCAACCATCTTCAAATGGAAGAAAAAGCAGCAGTCAAAATCTGGCTCTTATAATTGGTATCAGCCTAGGAAGTGCTTTTTTCATTTTAGTTTTAACACTATCACTTGTGTACGTATATTGTCTCAAAATGAAGAGATTGAATAGAAGTACTTCATCGTCCGAGACTGCAGATAAGTTACTTTCAGGTGTTTCAGGTTATGTAAGCAAGCCAACAATGTATGAAATTGATGCAATCATGGAAGGTACAACGAATCTGAGTGACAATTGTAAGATTGGTGAATCAGTTTACAAGGCTAATATAGATGGTAGAGTTTTAGCAGTGAAAAAAATCAAAAAAGATGCTTCAGAGGAGCTGAAAATTCTGCAGAAGGTAAACCATGGAAATCTTGTGAAACTAATGGGTGTGTCTTCTGACAATGATGGAAACTGTTTTCTGGTCTATGAGTATGCTGAAAATGGATCACTTGAAGAGTGGTTGTTCTCGGAATCTTCGAAAACTTCAAACTCGGTGGTTTCGCTTACATGGTCTCAGAGAATAACCATTGCCATGGATGTTGCAATCGGTCTGCAATACATGCATGAACATACTTATCCACGAATAATCCACAGAGACATCACAACAAGTAATATCCTTCTTGGCTCAAATTTTAAGGCCAAGATAGCGAATTTCGGGATGGCTAGAACTTCAACCAACTCAATGATGCCGAAAATTGATGTTTTCGCTTTTGGGGTGGTTCTAATAGAGTTGTTAACTGGCAAGAAAGCTATGACAACTAAAGAAAATGGTGAGGTTGTTATTCTGTGGAAGGATTTTTGGAAGATTTTTGATCTTGAAGGGAATAGAGAAGAGAGGTTAAGAAAATGGATGGATCCTAAGTTAGAGAGTTTTTATCCTATAGATAATGCTCTAAGTTTGGCTTCTTTGGCAGTAAATTGCACTGCTGATAAATCATTGTCTAGACCAACCATTGCAGAAATTGTTCTTTGTCTTTCTCTTCTCAACCAACCATCATCTGAACCAATGTTAGAAAGATCCTTGACATCTGGTTTAGATGCTGAAGCTACTCATGTTGTTACTTCTGTAATAGCTCGTTAATCAAGTGAAGGTAATAGTGATTCAGTTTGTCATATTCAAGATGGTACTACTTTGCTTACATCTTTATGTGTGGAGTTAATTTTATGGTTAGTTTATTTAGGGAAGTGTTCTAAATTTCATTTTTTCATCTGTTATTCTTTAATGCATGAGTTTCGGTAAAGTGAATTGTAAGCTGCTATTGAACTCAAAATAAATTTGCTTATTGTACATGTTAGTGGTGAT</TRANSCRIPT_SEQUENCE> </TU> </TIGR> |
| |
Input:String | |
Name:TIGRXML |
<?xml version='1.0' encoding='ISO-8859-1'?> <TIGR> <TU> <FEAT_NAME>1185.t00006</FEAT_NAME> <DATE>10-Dec-2004</DATE> <GENE_INFO> <LOCUS>AC147960_6.1</LOCUS> <COM_NAME CURATED="0" IS_PRIMARY="1">LysM domain-containing receptor-like kinase 6-related</COM_NAME> <PUB_COMMENT> </PUB_COMMENT> <IS_PSEUDOGENE>0</IS_PSEUDOGENE> <FUNCT_ANNOT_EVIDENCE TYPE="AUTO"> <ASSIGN_ACC ASSIGN_METHOD="autoBYOB">GB:AAQ73157.1:LysM domain-containing receptor-like kinase 6</ASSIGN_ACC> </FUNCT_ANNOT_EVIDENCE> <DATE>10-Dec-2004</DATE> </GENE_INFO> <COORDSET> <END5>20863</END5> <END3>18885</END3> </COORDSET> <MODEL COMMENT="IMGA|AC147960_6.1 AC147960.8 20863-18885 E EGN_Mt041209 20041210"> <FEAT_NAME>1185.m00006</FEAT_NAME> <CDNA_SUPPORT> <ACCESSION>spans 12 percent of the model length</ACCESSION> <ACCESSION ANNOT_INCORP="1" DBXREF="MENS|MtD08014_GC" IS_FLI="0" UNIQUE_TO_ISOFORM="1">cDNA support spans 12 percent of the model</ACCESSION> <ACCESSION ANNOT_INCORP="1" DBXREF="MtEST|BG448539" IS_FLI="0" UNIQUE_TO_ISOFORM="1">cDNA support spans 12 percent of the model</ACCESSION> </CDNA_SUPPORT> <DATE>10-Dec-2004</DATE> <COORDSET> <END5>20764</END5> <END3>19067</END3> </COORDSET> <MODEL_ATTRIBUTE> <ATTRIBUTE_TYPE METHOD="MW,molwt_update.dbi"> <ATT_SCORE DESC="Molecular Weight">27758.95</ATT_SCORE> </ATTRIBUTE_TYPE> <ATTRIBUTE_TYPE METHOD="PI,molwt_update.dbi"> <ATT_SCORE DESC="Isoelectric point">7.2052</ATT_SCORE> </ATTRIBUTE_TYPE> <ATTRIBUTE_TYPE METHOD="targetP,targetP_update.dbi"> <ATT_SCORE DESC="Location">secreted</ATT_SCORE> <ATT_SCORE DESC="c:m:s:o scores">0.060:0.011:0.937:0.040</ATT_SCORE> <ATT_SCORE DESC="RC-value">1</ATT_SCORE> <ATT_SCORE DESC="network:peplen">plant:150</ATT_SCORE> <ATT_SCORE DESC="c:m:s:o cutoffs">0:0:0:0</ATT_SCORE> </ATTRIBUTE_TYPE> <ATTRIBUTE_TYPE METHOD="EGN_Mt041209"> <ATT_SCORE DESC="IMGA gene call evidence class">E</ATT_SCORE> </ATTRIBUTE_TYPE> </MODEL_ATTRIBUTE> <MODEL_EVIDENCE> <EVIDENCE_TYPE> <SEQUENCE_DB_MATCH> <SEARCH_DB DB_NAME="MENS|MtAA" DB_TYPE="Database of peptides predicted from Medicago truncatula EST-Clusters"> <SEQ_ELEMENT ACCESSION="MtD06512_1_AA" DESCRIPTION="spans 91 percent of the exon" FEAT_TYPE="mth2-27f16.61.1:Exon" METHOD="blastx" SCORE="91"> <ASMBL_COORDS> <COORDSET> <END5>20764</END5> <END3>20176</END3> </COORDSET> </ASMBL_COORDS> </SEQ_ELEMENT> <SEQ_ELEMENT ACCESSION="MtD04912_1_AA" DESCRIPTION="spans 91 percent of the exon" FEAT_TYPE="mth2-27f16.61.1:Exon" METHOD="blastx" SCORE="91"> <ASMBL_COORDS> <COORDSET> <END5>20764</END5> <END3>20176</END3> </COORDSET> </ASMBL_COORDS> </SEQ_ELEMENT> <SEQ_ELEMENT ACCESSION="MtD07324_1_AA" DESCRIPTION="spans 91 percent of the exon" FEAT_TYPE="mth2-27f16.61.1:Exon" METHOD="blastx" SCORE="91"> <ASMBL_COORDS> <COORDSET> <END5>20764</END5> <END3>20176</END3> </COORDSET> </ASMBL_COORDS> </SEQ_ELEMENT> </SEARCH_DB> <SEARCH_DB DB_NAME="ProDom" DB_TYPE="Protein Domain database (subset of families with at least two domains)"> <SEQ_ELEMENT ACCESSION="pd:PD023767;sp:Q9LVE3:Q9LVE3_ARATH" DESCRIPTION="spans 51 percent of the exon" FEAT_TYPE="mth2-27f16.61.1:Exon" METHOD="blastx" SCORE="51"> <ASMBL_COORDS> <COORDSET> <END5>20764</END5> <END3>20176</END3> </COORDSET> </ASMBL_COORDS> </SEQ_ELEMENT> </SEARCH_DB> </SEQUENCE_DB_MATCH> </EVIDENCE_TYPE> </MODEL_EVIDENCE> <EXON> <FEAT_NAME>1185.e00025</FEAT_NAME> <DATE>Dec 10 2004 11:16PM</DATE> <COORDSET> <END5>20863</END5> <END3>20176</END3> </COORDSET> <CDS> <FEAT_NAME>1185.c00025</FEAT_NAME> <DATE>Dec 10 2004 11:16PM</DATE> <COORDSET> <END5>20764</END5> <END3>20176</END3> </COORDSET> </CDS> <UTRS> <LEFT_UTR> <COORDSET> <END5>20863</END5> <END3>20765</END3> </COORDSET> </LEFT_UTR> </UTRS> </EXON> <EXON> <FEAT_NAME>1185.e00026</FEAT_NAME> <DATE>Dec 10 2004 11:16PM</DATE> <COORDSET> <END5>19899</END5> <END3>19845</END3> </COORDSET> <CDS> <FEAT_NAME>1185.c00026</FEAT_NAME> <DATE>Dec 10 2004 11:16PM</DATE> <COORDSET> <END5>19899</END5> <END3>19845</END3> </COORDSET> </CDS> </EXON> <EXON> <FEAT_NAME>1185.e00027</FEAT_NAME> <DATE>Dec 10 2004 11:16PM</DATE> <COORDSET> <END5>19272</END5> <END3>19239</END3> </COORDSET> <CDS> <FEAT_NAME>1185.c00027</FEAT_NAME> <DATE>Dec 10 2004 11:16PM</DATE> <COORDSET> <END5>19272</END5> <END3>19239</END3> </COORDSET> </CDS> </EXON> <EXON> <FEAT_NAME>1185.e00028</FEAT_NAME> <DATE>Dec 10 2004 11:16PM</DATE> <COORDSET> <END5>19135</END5> <END3>18885</END3> </COORDSET> <CDS> <FEAT_NAME>1185.c00028</FEAT_NAME> <DATE>Dec 10 2004 11:16PM</DATE> <COORDSET> <END5>19135</END5> <END3>19067</END3> </COORDSET> </CDS> <UTRS> <RIGHT_UTR> <COORDSET> <END5>19066</END5> <END3>18885</END3> </COORDSET> </RIGHT_UTR> </UTRS> </EXON> <CDS_SEQUENCE>ATGAAAATCAGTTTCAGTTTCATAGTTCTTATCTTGTTAATAGCTTCAACAGAATCAAAGTGTAACGAAGGTTGTAGTCTAGCTCTAGCGTCATACACCTTAAACCATGTTTCCAACCTTACATATATTTCAAACATTATGAAATCCAATGTTCTTTCAAAACCTCAAGATATCATCATCAACAACGACAAAAACAAAAGGGCGAATGTTCCCTTCCCTTGTAATTGCATCAATGGAGAGTTTCTTGCTTATACATTTCTCTATGAGCTTCAGCCAGGAGAAACATATACATCAGTTGCAGAAGAGAGTTTTTCAAATTTGACTACTGATGTTTGGATGCAAAACTTCAATGTTTATAGACCAACTAATATTCCTGATTTTGCAATGATTAAAGTTACTGTTAATTGTTCTTGTGGGAATAAAGAGGTTTCTATGGATTATGGATTGTTCATCACATATCCACTTAGAAGTGAGGACACTTTGGAGTCTATTGCTAAGGGTGCAGAGATTGAGGCTGAGTTGCTGCAGAGGTACAACCCTGGTGTTAATTTCAGCAAAGGAAGTGGTCTTGTTTTTATTCCAGGGAAAGGCACCACCACTAAGTACCAAAAACTACTATCTCTAATAGTAGCAAAGCGGACGGAATCAAAATGGAAGCTATTTGCCCCTTCACCCGAGCACAGTAGGTTTGATCTCTTACTCCTGCAAAAAGTTGGTAATTTGATTATTGTCTTTGCTGAAGTTTGA</CDS_SEQUENCE> <PROTEIN_SEQUENCE>MKISFSFIVLILLIASTESKCNEGCSLALASYTLNHVSNLTYISNIMKSNVLSKPQDIIINNDKNKRANVPFPCNCINGEFLAYTFLYELQPGETYTSVAEESFSNLTTDVWMQNFNVYRPTNIPDFAMIKVTVNCSCGNKEVSMDYGLFITYPLRSEDTLESIAKGAEIEAELLQRYNPGVNFSKGSGLVFIPGKGTTTKYQKLLSLIVAKRTESKWKLFAPSPEHSRFDLLLLQKVGNLIIVFAEV</PROTEIN_SEQUENCE> </MODEL> <TRANSCRIPT_SEQUENCE>TCTTATCTTCTTTCTTACACTAATTTATTCATTAACACTAACACAAAAACTTCAATTTTCTCTTCTTCTCTTCAAAAACCATTTGTTATATTCAACTCAATGAAAATCAGTTTCAGTTTCATAGTTCTTATCTTGTTAATAGCTTCAACAGAATCAAAGTGTAACGAAGGTTGTAGTCTAGCTCTAGCGTCATACACCTTAAACCATGTTTCCAACCTTACATATATTTCAAACATTATGAAATCCAATGTTCTTTCAAAACCTCAAGATATCATCATCAACAACGACAAAAACAAAAGGGCGAATGTTCCCTTCCCTTGTAATTGCATCAATGGAGAGTTTCTTGCTTATACATTTCTCTATGAGCTTCAGCCAGGAGAAACATATACATCAGTTGCAGAAGAGAGTTTTTCAAATTTGACTACTGATGTTTGGATGCAAAACTTCAATGTTTATAGACCAACTAATATTCCTGATTTTGCAATGATTAAAGTTACTGTTAATTGTTCTTGTGGGAATAAAGAGGTTTCTATGGATTATGGATTGTTCATCACATATCCACTTAGAAGTGAGGACACTTTGGAGTCTATTGCTAAGGGTGCAGAGATTGAGGCTGAGTTGCTGCAGAGGTACAACCCTGGTGTTAATTTCAGCAAAGGAAGTGGTCTTGTTTTTATTCCAGGGAAAGGTTAGTTTTTTAATTTTTCTGTCATGGTTTAATTGATTTCAACTCTATATGGGGATTTTGTACTTTCTGTAAAGTGGGTTTATGAAATAGCACATTAGTACACATTGTTGCTTATTCTGATTTTAGATTTTGTCAATAAGTATATCTAGGACTGAATGTGTTATATTCCATAGATGAAGTTGAGAGAAAGTTAGAAAACTTTTGTATTGATGGTAATGAGTAATATTGCAAATGAGAAAATTGACCTTTTTATGAGGTGATTACATCTATATATAGGCACCACCACTAAGTACCAAAAACTACTATCTCTAATAGTAGCAAAGCGGACGGAGTGAGTAAAGCAAGAGCCCCTGCCCTTTGGGCTTGGTCCATTTGTTAGTTGTGATACAACTAGGAGGGGATAGAGGGTGCGGGGGGCGACAGATTAAGGTAGACCTGTAATCTTGACTACAATAATTAAACAAAGTTTTGTACTATGTAATCGTAACCATTGCATAATAGAAAACTACAATAGACAACAGTCACTCTGCGACTGCAGTCCAAGGTGTAGCACATGCTAGGATAGTTAGAGTTTTGTTATTGTTAGTCAATTTGGAATTAGTTAGGAGTTAGTTACTCAATTAGTTGTGCAGCTGGGTTCTATTAATAACACTAACATTATTGTGTACAAAATTCAATATCTTTTATCAATCTATAATATATGATTCCTTAATGAGCTTTTATCTCAATGTGTATTCCTATGCTCTCTTTCTCTCCTGTGAGTATGATCTATGGCCCTATCATCCCATGATTCTTCACAGCAATCGACCGAACTCTGTAATCAATCTTTGTGTTCTTGTGCGTTTATTTATTTGATTACTTTAGAGTCGGGTTTGCCTCAATTTTCGTCCTTTCACTTTACAGATCAAAATGGAAGCTATTTGCCCCTTCACCCGAGGTATAAATTCTATACTTATTCTCCATGTTAATTTACATCAAGTTTTAATTTTTTTGACATTATCTGAAAAAACATTATAATAAATTTTCATTTTCTTTTGCAGCACAGTAGGTTTGATCTCTTACTCCTGCAAAAAGTTGGTAATTTGATTATTGTCTTTGCTGAAGTTTGATATCAATGTCTATATCTAAGCCAAGGTAAAGATATCGTCAAAGTTATAATGCCAATGTTATTTCATCTCATGTATTATAGTTTCTACATGAGCAGGTCTAGGAACTGTGGCTATTACTGGAATATCTGTTGGAGTACTAGCAGCGCTTTTACTATTGTTATTTTTTGTGTATATTAAATATT</TRANSCRIPT_SEQUENCE> </TU> </TIGR> |
| |
Input:String | |
Name:TIGRXML |
<?xml version='1.0' encoding='ISO-8859-1'?> <TIGR> <TU> <FEAT_NAME>1185.t00009</FEAT_NAME> <DATE>10-Dec-2004</DATE> <GENE_INFO> <LOCUS>AC147960_9.1</LOCUS> <COM_NAME CURATED="0" IS_PRIMARY="1">LysM domain-containing receptor-like kinase 7-related</COM_NAME> <PUB_COMMENT> </PUB_COMMENT> <IS_PSEUDOGENE>0</IS_PSEUDOGENE> <FUNCT_ANNOT_EVIDENCE TYPE="AUTO"> <ASSIGN_ACC ASSIGN_METHOD="autoBYOB">GB:AAQ73158.1:LysM domain-containing receptor-like kinase 7</ASSIGN_ACC> </FUNCT_ANNOT_EVIDENCE> <DATE>10-Dec-2004</DATE> </GENE_INFO> <COORDSET> <END5>25816</END5> <END3>24047</END3> </COORDSET> <MODEL COMMENT="IMGA|AC147960_9.1 AC147960.8 25816-24047 F EGN_Mt041209 20041210"> <FEAT_NAME>1185.m00009</FEAT_NAME> <CDNA_SUPPORT> <ACCESSION>spans 100 percent of the model length</ACCESSION> <ACCESSION ANNOT_INCORP="1" DBXREF="MtGI|TC82240" IS_FLI="1" UNIQUE_TO_ISOFORM="1">cDNA support spans 100 percent of the model</ACCESSION> <ACCESSION ANNOT_INCORP="1" DBXREF="MENS|MtD20053_GC" IS_FLI="0" UNIQUE_TO_ISOFORM="1">cDNA support spans 21 percent of the model</ACCESSION> </CDNA_SUPPORT> <DATE>10-Dec-2004</DATE> <COORDSET> <END5>25783</END5> <END3>24188</END3> </COORDSET> <MODEL_ATTRIBUTE> <ATTRIBUTE_TYPE METHOD="MW,molwt_update.dbi"> <ATT_SCORE DESC="Molecular Weight">25403.37</ATT_SCORE> </ATTRIBUTE_TYPE> <ATTRIBUTE_TYPE METHOD="PI,molwt_update.dbi"> <ATT_SCORE DESC="Isoelectric point">4.6579</ATT_SCORE> </ATTRIBUTE_TYPE> <ATTRIBUTE_TYPE METHOD="targetP,targetP_update.dbi"> <ATT_SCORE DESC="Location">secreted</ATT_SCORE> <ATT_SCORE DESC="c:m:s:o scores">0.005:0.093:0.976:0.026</ATT_SCORE> <ATT_SCORE DESC="RC-value">1</ATT_SCORE> <ATT_SCORE DESC="network:peplen">plant:150</ATT_SCORE> <ATT_SCORE DESC="c:m:s:o cutoffs">0:0:0:0</ATT_SCORE> </ATTRIBUTE_TYPE> <ATTRIBUTE_TYPE METHOD="EGN_Mt041209"> <ATT_SCORE DESC="IMGA gene call evidence class">F</ATT_SCORE> </ATTRIBUTE_TYPE> </MODEL_ATTRIBUTE> <MODEL_EVIDENCE> <EVIDENCE_TYPE> <SEQUENCE_DB_MATCH> <SEARCH_DB DB_NAME="MENS|MtAA" DB_TYPE="Database of peptides predicted from Medicago truncatula EST-Clusters"> <SEQ_ELEMENT ACCESSION="MtD04912_1_AA" DESCRIPTION="spans 99 percent of the exon" FEAT_TYPE="mth2-27f16.91.1:Exon" METHOD="blastx" SCORE="99"> <ASMBL_COORDS> <COORDSET> <END5>25783</END5> <END3>25150</END3> </COORDSET> </ASMBL_COORDS> </SEQ_ELEMENT> </SEARCH_DB> <SEARCH_DB DB_NAME="ProDom" DB_TYPE="Protein Domain database (subset of families with at least two domains)"> <SEQ_ELEMENT ACCESSION="pd:PD023767;sp:Q9LVE3:Q9LVE3_ARATH" DESCRIPTION="spans 47 percent of the exon" FEAT_TYPE="mth2-27f16.91.1:Exon" METHOD="blastx" SCORE="47"> <ASMBL_COORDS> <COORDSET> <END5>25783</END5> <END3>25150</END3> </COORDSET> </ASMBL_COORDS> </SEQ_ELEMENT> </SEARCH_DB> </SEQUENCE_DB_MATCH> </EVIDENCE_TYPE> </MODEL_EVIDENCE> <EXON> <FEAT_NAME>1185.e00037</FEAT_NAME> <DATE>Dec 10 2004 11:16PM</DATE> <COORDSET> <END5>25816</END5> <END3>25150</END3> </COORDSET> <CDS> <FEAT_NAME>1185.c00037</FEAT_NAME> <DATE>Dec 10 2004 11:16PM</DATE> <COORDSET> <END5>25783</END5> <END3>25150</END3> </COORDSET> </CDS> <UTRS> <LEFT_UTR> <COORDSET> <END5>25816</END5> <END3>25784</END3> </COORDSET> </LEFT_UTR> </UTRS> </EXON> <EXON> <FEAT_NAME>1185.e00038</FEAT_NAME> <DATE>Dec 10 2004 11:16PM</DATE> <COORDSET> <END5>24331</END5> <END3>24298</END3> </COORDSET> <CDS> <FEAT_NAME>1185.c00038</FEAT_NAME> <DATE>Dec 10 2004 11:16PM</DATE> <COORDSET> <END5>24331</END5> <END3>24298</END3> </COORDSET> </CDS> </EXON> <EXON> <FEAT_NAME>1185.e00039</FEAT_NAME> <DATE>Dec 10 2004 11:16PM</DATE> <COORDSET> <END5>24200</END5> <END3>24047</END3> </COORDSET> <CDS> <FEAT_NAME>1185.c00039</FEAT_NAME> <DATE>Dec 10 2004 11:16PM</DATE> <COORDSET> <END5>24200</END5> <END3>24188</END3> </COORDSET> </CDS> <UTRS> <RIGHT_UTR> <COORDSET> <END5>24187</END5> <END3>24047</END3> </COORDSET> </RIGHT_UTR> </UTRS> </EXON> <CDS_SEQUENCE>ATGAAACCAATCAAATTCAGATTATCATTTTTATTCATGTTACTAGCCTCTAAATCCTTCATAGCAGAATCAAAATGTAGCAAAACTTGTAATATAGCGTTAGCTTCCTATTATCTACAAGATGATACAAATCTCACATATGTTTCAAACATCATGCAATCAAACCTTGTTACAAAACCAGAAGATATTGTTAGTTACAACACAGACACAATAACAAACAAAGATTTTGTCCAATCTTTTACAAGAGTGAATGTTCCATTCCCTTGTGATTGCATCCATGATGAGTTTCTTGGCCATATATTTCAATACCAAGTTGCTACAAAAGATACTTATTTATCTGTTGCTAGTAACAATTATTCCAATTTGACTACTTCTGAATGGTTGCAAAATTTCAATAGCTATCCATCAAATGATATTCCTGATACTGGAACTCTTAATGTTACTGTTAATTGTTCATGTGGGAACAGTGATGTTTCCAAGGATTATGGTTTGTTTATTACATATCCTCTTAGACCTGAGGATTCTTTGGAATTGATTTCTAATAAGACTGAAATTGATGCTGAGTTGCTGCAAAAGTATAACCCTGGTGTGAATTTTAGTCAAGGGAGTGGTTTGGTTTATATTCCTGGGAAAGACCAAAATCGTAACTATGTGCCTTTTCACACTAGCACTGGAGGTTAG</CDS_SEQUENCE> <PROTEIN_SEQUENCE>MKPIKFRLSFLFMLLASKSFIAESKCSKTCNIALASYYLQDDTNLTYVSNIMQSNLVTKPEDIVSYNTDTITNKDFVQSFTRVNVPFPCDCIHDEFLGHIFQYQVATKDTYLSVASNNYSNLTTSEWLQNFNSYPSNDIPDTGTLNVTVNCSCGNSDVSKDYGLFITYPLRPEDSLELISNKTEIDAELLQKYNPGVNFSQGSGLVYIPGKDQNRNYVPFHTSTGG</PROTEIN_SEQUENCE> </MODEL> <TRANSCRIPT_SEQUENCE>TTCTTATCCTATGTTCCTATTATACTGTACACAATGAAACCAATCAAATTCAGATTATCATTTTTATTCATGTTACTAGCCTCTAAATCCTTCATAGCAGAATCAAAATGTAGCAAAACTTGTAATATAGCGTTAGCTTCCTATTATCTACAAGATGATACAAATCTCACATATGTTTCAAACATCATGCAATCAAACCTTGTTACAAAACCAGAAGATATTGTTAGTTACAACACAGACACAATAACAAACAAAGATTTTGTCCAATCTTTTACAAGAGTGAATGTTCCATTCCCTTGTGATTGCATCCATGATGAGTTTCTTGGCCATATATTTCAATACCAAGTTGCTACAAAAGATACTTATTTATCTGTTGCTAGTAACAATTATTCCAATTTGACTACTTCTGAATGGTTGCAAAATTTCAATAGCTATCCATCAAATGATATTCCTGATACTGGAACTCTTAATGTTACTGTTAATTGTTCATGTGGGAACAGTGATGTTTCCAAGGATTATGGTTTGTTTATTACATATCCTCTTAGACCTGAGGATTCTTTGGAATTGATTTCTAATAAGACTGAAATTGATGCTGAGTTGCTGCAAAAGTATAACCCTGGTGTGAATTTTAGTCAAGGGAGTGGTTTGGTTTATATTCCTGGGAAAGGTACTTTCTTATTTTTGCTTCTATATATGTTTTGGTCTTTTGATATCAATTCATGATGTTTTTGTACATACTGTGAGATTGATTTTCTTATAGTATGTATTAAATTGGTTAAAGGGTAATAGGTATTTGCTATTTTACTTTTGATTTTTGTGAATTTATATAGAATCATGGTTTTTTTTGTACCAAAAAAAAAAAAAAAGAATCATGGTTTTTGAAAAGGACAAAACTTAAGTGTATTTTTATAGGTGCTTTTCGTAGTATTCTTCACTTAGCATACAATTTCTGTGGTTATAACAAACTTAGAGAAAGTTATAGATTGGAGGAAATCATTGGCAGTTACGAACATTTTAAGTGAAGAACACGAAAAGCACCTAACCTAAGTTTTGAAATGTCCAGAATCACAATTTGAGCCATTACATCACAGTTTTTTTATGTCTTTCCGACTGAAATATGGCCATCATTGAGGTCACATTTGATCGTGATTCTCTAGAAAATCAATGATAACCTTGAATAGGAATAAAAAGTAGACTATCCCAGATAAATGAGAAATCTTGATTTTTGTTTATTTCTCTTAAACTTAAGCTTCCTAATTGCTTGTTTTGGCTATAAATCTTAGTATGGAGAAATGCTAATGATTTCTAATAATCTGATTAGTACTGCATTCAAAGTGTTTACATGATAAGAAATGCATTGAAGGTGTGTGTAACTTTTTAGCATTATGCTGCTTATAGTTGTGTGCCTGTATCTTCAACTTCATTATGGAGATCTATAAGCTTTGAAACATTATCCTCACATTTGATTTTCTATTCAATTTCCAGACCAAAATCGTAACTATGTGCCTTTTCACACTAGGTAATTCCCTTTTTGCTTTGCACATGAAGTTAAATAATTTTTCATACTCTTAATAACATGCTAATCTTGATGGCCTTGTTTTCATTTTCATTTTCAGCACTGGAGGTTAGTTTCAACCTTCAAACTACACAAAAAGTTGAATTGTTGATTATTGTTATACTCGAGTTTGGCATTCATATCAGATGCAAGGTAAAAATATCCTTAAAGTAGAACTCTAATCTACTTCCATCTCATATTACATATATTTTTGT</TRANSCRIPT_SEQUENCE> </TU> </TIGR> |
| |
Input:String | |
Name:TIGRXML |
<?xml version="1.0" encoding="ISO-8859-1"?> <TIGR> <TU> <FEAT_NAME>1197.t00015</FEAT_NAME> <DATE>10-Dec-2004</DATE> <GENE_INFO> <LOCUS>AC148241_15.1</LOCUS> <COM_NAME CURATED="0" IS_PRIMARY="1">Protein kinase; Peptidoglycan-binding LysM; Protein kinase-like; Serine/threonine protein kinase; Tyrosine protein kinase</COM_NAME> <PUB_COMMENT> </PUB_COMMENT> <IS_PSEUDOGENE>0</IS_PSEUDOGENE> <FUNCT_ANNOT_EVIDENCE TYPE="CURATED"/> <DATE>10-Dec-2004</DATE> </GENE_INFO> <COORDSET> <END5>82352</END5> <END3>84348</END3> </COORDSET> <MODEL COMMENT="IMGA|AC148241_15.1 AC148241.21 82352-84348 H EGN_Mt041209 20041210"> <FEAT_NAME>1197.m00015</FEAT_NAME> <DATE>10-Dec-2004</DATE> <COORDSET> <END5>82400</END5> <END3>84172</END3> </COORDSET> <MODEL_ATTRIBUTE> <ATTRIBUTE_TYPE METHOD="MW,molwt_update.dbi"> <ATT_SCORE DESC="Molecular Weight">66343.86</ATT_SCORE> </ATTRIBUTE_TYPE> <ATTRIBUTE_TYPE METHOD="PI,molwt_update.dbi"> <ATT_SCORE DESC="Isoelectric point">8.0067</ATT_SCORE> </ATTRIBUTE_TYPE> <ATTRIBUTE_TYPE METHOD="SP-HMM,signalP-2.0"> <ATT_SCORE DESC="HMM-position">26</ATT_SCORE> <ATT_SCORE DESC="HMM-prediction">Signal peptide</ATT_SCORE> <ATT_SCORE DESC="HMM-SPprob">0.918</ATT_SCORE> <ATT_SCORE DESC="HMM-SAprob">0.007</ATT_SCORE> <ATT_SCORE DESC="HMM-cleavprob">0.605</ATT_SCORE> </ATTRIBUTE_TYPE> <ATTRIBUTE_TYPE METHOD="SP-NN,signalP-2.0"> <ATT_SCORE DESC="NN-position">26</ATT_SCORE> <ATT_SCORE DESC="NN-cleavsite">ANG-KN</ATT_SCORE> <ATT_SCORE DESC="NN-maxY">0.679</ATT_SCORE> <ATT_SCORE DESC="NN-meanS">0.700</ATT_SCORE> </ATTRIBUTE_TYPE> <ATTRIBUTE_TYPE METHOD="targetP,targetP_update.dbi"> <ATT_SCORE DESC="Location">secreted</ATT_SCORE> <ATT_SCORE DESC="c:m:s:o scores">0.083:0.008:0.956:0.036</ATT_SCORE> <ATT_SCORE DESC="RC-value">1</ATT_SCORE> <ATT_SCORE DESC="network:peplen">plant:150</ATT_SCORE> <ATT_SCORE DESC="c:m:s:o cutoffs">0:0:0:0</ATT_SCORE> </ATTRIBUTE_TYPE> <ATTRIBUTE_TYPE METHOD="EGN_Mt041209"> <ATT_SCORE DESC="IMGA gene call evidence class">H</ATT_SCORE> </ATTRIBUTE_TYPE> </MODEL_ATTRIBUTE> <MODEL_EVIDENCE> <EVIDENCE_TYPE> <SEQUENCE_DB_MATCH> <SEARCH_DB DB_NAME="MENS|MtAA" DB_TYPE="Database of peptides predicted from Medicago truncatula EST-Clusters"> <SEQ_ELEMENT ACCESSION="MtD11480_1_AA" DESCRIPTION="spans 30 percent of the exon" FEAT_TYPE="mth2-14m21.151.1:Exon" METHOD="blastx" SCORE="30"> <ASMBL_COORDS> <COORDSET> <END5>82400</END5> <END3>84172</END3> </COORDSET> </ASMBL_COORDS> </SEQ_ELEMENT> </SEARCH_DB> <SEARCH_DB DB_NAME="ProDom" DB_TYPE="Protein Domain database (subset of families with at least two domains)"> <SEQ_ELEMENT ACCESSION="pd:PD000001;sp:O81906:O81906_ARATH" DESCRIPTION="spans 26 percent of the exon" FEAT_TYPE="mth2-14m21.151.1:Exon" METHOD="blastx" SCORE="26"> <ASMBL_COORDS> <COORDSET> <END5>82400</END5> <END3>84172</END3> </COORDSET> </ASMBL_COORDS> </SEQ_ELEMENT> <SEQ_ELEMENT ACCESSION="pd:PD000001;sp:Q9S7D9:Q9S7D9_ARATH" DESCRIPTION="spans 26 percent of the exon" FEAT_TYPE="mth2-14m21.151.1:Exon" METHOD="blastx" SCORE="26"> <ASMBL_COORDS> <COORDSET> <END5>82400</END5> <END3>84172</END3> </COORDSET> </ASMBL_COORDS> </SEQ_ELEMENT> </SEARCH_DB> </SEQUENCE_DB_MATCH> </EVIDENCE_TYPE> </MODEL_EVIDENCE> <EXON> <FEAT_NAME>1197.e00050</FEAT_NAME> <DATE>Dec 10 2004 11:28PM</DATE> <COORDSET> <END5>82352</END5> <END3>84348</END3> </COORDSET> <CDS> <FEAT_NAME>1197.c00050</FEAT_NAME> <DATE>Dec 10 2004 11:28PM</DATE> <COORDSET> <END5>82400</END5> <END3>84172</END3> </COORDSET> </CDS> <UTRS> <LEFT_UTR> <COORDSET> <END5>82352</END5> <END3>82399</END3> </COORDSET> </LEFT_UTR> <RIGHT_UTR> <COORDSET> <END5>84173</END5> <END3>84348</END3> </COORDSET> </RIGHT_UTR> </UTRS> </EXON> <CDS_SEQUENCE>ATGGTTTCTTCCTTTTTTCATACACTCATATTCTTTTCTGCCACCCATATCCTACTTCAATTGCCACAAGCCAATGGAAAAAACTTCTCATGTACTTTGAATTCCTCTCCTTCATGTGACACATATGTTGCATACTTTGCTAACTCTCCAAACTTTTTAACCCTCACAGCCATATCTGATATATTTGACACCAGTCCTCAATCCATTGCAAGAGCAAGCAACATAAAAGATGAAAATATGAACCTCATTCATGGCCAACTTTTGCTTATACCTATAACTTGTGGTTGCAATGGAAATGGAAACTACTCTTTTGCCAATATCTCACACTTAATCAAAGAAAGTGAAAGTTACTATTATCTTTCGACCATTTCGTATCAGAATCTCACTAATTGGCAGACAGTGGAAGATTCAAACCCTAATCTGAATCCATATTTGTTGAAAATAGGCACCAAAATAAACATCCCTTTGTTTTGTAGGTGCCCTTCAAACTATTTTGCAAAAGGGATAGAGTATCTCATTACTTATGTTTGGCAGCCTAATGATAATCTTACACTTGTAGCTTCCAAGCTTGGTGCATCACCAAAGGACATAATCACAGCAAATACAAACAACTTTGGTCAAAACTTCACTGTTGCAATCAACCTTCCAGTTTTTATTCCTGTGAAAAACTTACCAGCTCTTTCTCAATCATACTATTCTTCAAGTGAAAGAAAGAGAATCAATCATTTTTCTATTATAATTTCCATTGGTATATGTCTAGGATGCACTATTCTGATTTCACTATTATTATTACTTTTTTATGTTTATTGTTTAAGGAAGAGAAAGGCTTGTGAGAATAAGTGTGTGCCTTCTGTGGAGATAACAGATAAGTTAATTTCCGAAGTTTCAAATTATGTAAGTAAGCCAACAGTGTATGAAGTTGGTATGATTATGAAAGCTACCATGAACCTTAATGAAATGTGTAAGATAGGGAAATCAGTGTACAAAGCTAAAATAGATGGTTTGGTTTTGGCTGTGAAAAATGTAAAGGGACATATCACAGTCACAGAAGAGTTGATGATTTTACAAAAGGTAAATCATGCAAATCTAGTGAAACTAGTAGGTGTCTCTTCAGGATATGATGGAAATCACTTTCTTGTATATGAATATGCTGAAAATGGATCTCTTTATAACTGGTTATTATCTGAGTTTTGCACTCTTAGTTGGAGTCAGAGGTTAAGCATAGCAGTTGATATTGCAATAGGGCTGCAATACTTGCATGAACACACACAACCATGTATAGTCCATAGGAACATCAAATCAAGTAACATTCTTCTTGACTCAAAATTTAAGGCCAAGATAGCAAATTTTTCTGTTGCAAGAACTACAAAGAATCCTATGATAACAAAAGTTGATGTTTTAGGTTATGGAATGGTTCTGATGGAGCTAATAACAGGAAAGAAGTTTTTGTCGTATAGCGAACATAGCGAGGTGAATATGTTGTGGAAAGATTTTAAGTGTGTGTTTGATACAGAACAAAAGAGAGAAGAAATTGTTAGAAGATGGATGGATCCTAAGTTAGGGAGGTTTTATAATGTTGTTGAAGCTCTTAGTTTATTCACTTTGGCAGTGAATTGCATAGAAGAACAACCTTTGTTAAGACCAACTATGGGAGAAGTTGTTCTTAGTCTTTCTCTTCTCACTCAACCCTCTCCTACTTTGTTAGAGGTGTCTTGGACTTATGGATTAGATGTAGAGGTTGCTGAAATGGTTACTCCCATCATAGCTCGTTGA</CDS_SEQUENCE> <PROTEIN_SEQUENCE>MVSSFFHTLIFFSATHILLQLPQANGKNFSCTLNSSPSCDTYVAYFANSPNFLTLTAISDIFDTSPQSIARASNIKDENMNLIHGQLLLIPITCGCNGNGNYSFANISHLIKESESYYYLSTISYQNLTNWQTVEDSNPNLNPYLLKIGTKINIPLFCRCPSNYFAKGIEYLITYVWQPNDNLTLVASKLGASPKDIITANTNNFGQNFTVAINLPVFIPVKNLPALSQSYYSSSERKRINHFSIIISIGICLGCTILISLLLLLFYVYCLRKRKACENKCVPSVEITDKLISEVSNYVSKPTVYEVGMIMKATMNLNEMCKIGKSVYKAKIDGLVLAVKNVKGHITVTEELMILQKVNHANLVKLVGVSSGYDGNHFLVYEYAENGSLYNWLLSEFCTLSWSQRLSIAVDIAIGLQYLHEHTQPCIVHRNIKSSNILLDSKFKAKIANFSVARTTKNPMITKVDVLGYGMVLMELITGKKFLSYSEHSEVNMLWKDFKCVFDTEQKREEIVRRWMDPKLGRFYNVVEALSLFTLAVNCIEEQPLLRPTMGEVVLSLSLLTQPSPTLLEVSWTYGLDVEVAEMVTPIIAR</PROTEIN_SEQUENCE> </MODEL> <TRANSCRIPT_SEQUENCE>TCTTCCCTTGTGCCTTTCATTTGTTCACCACCTTTAATTTTGACAACAATGGTTTCTTCCTTTTTTCATACACTCATATTCTTTTCTGCCACCCATATCCTACTTCAATTGCCACAAGCCAATGGAAAAAACTTCTCATGTACTTTGAATTCCTCTCCTTCATGTGACACATATGTTGCATACTTTGCTAACTCTCCAAACTTTTTAACCCTCACAGCCATATCTGATATATTTGACACCAGTCCTCAATCCATTGCAAGAGCAAGCAACATAAAAGATGAAAATATGAACCTCATTCATGGCCAACTTTTGCTTATACCTATAACTTGTGGTTGCAATGGAAATGGAAACTACTCTTTTGCCAATATCTCACACTTAATCAAAGAAAGTGAAAGTTACTATTATCTTTCGACCATTTCGTATCAGAATCTCACTAATTGGCAGACAGTGGAAGATTCAAACCCTAATCTGAATCCATATTTGTTGAAAATAGGCACCAAAATAAACATCCCTTTGTTTTGTAGGTGCCCTTCAAACTATTTTGCAAAAGGGATAGAGTATCTCATTACTTATGTTTGGCAGCCTAATGATAATCTTACACTTGTAGCTTCCAAGCTTGGTGCATCACCAAAGGACATAATCACAGCAAATACAAACAACTTTGGTCAAAACTTCACTGTTGCAATCAACCTTCCAGTTTTTATTCCTGTGAAAAACTTACCAGCTCTTTCTCAATCATACTATTCTTCAAGTGAAAGAAAGAGAATCAATCATTTTTCTATTATAATTTCCATTGGTATATGTCTAGGATGCACTATTCTGATTTCACTATTATTATTACTTTTTTATGTTTATTGTTTAAGGAAGAGAAAGGCTTGTGAGAATAAGTGTGTGCCTTCTGTGGAGATAACAGATAAGTTAATTTCCGAAGTTTCAAATTATGTAAGTAAGCCAACAGTGTATGAAGTTGGTATGATTATGAAAGCTACCATGAACCTTAATGAAATGTGTAAGATAGGGAAATCAGTGTACAAAGCTAAAATAGATGGTTTGGTTTTGGCTGTGAAAAATGTAAAGGGACATATCACAGTCACAGAAGAGTTGATGATTTTACAAAAGGTAAATCATGCAAATCTAGTGAAACTAGTAGGTGTCTCTTCAGGATATGATGGAAATCACTTTCTTGTATATGAATATGCTGAAAATGGATCTCTTTATAACTGGTTATTATCTGAGTTTTGCACTCTTAGTTGGAGTCAGAGGTTAAGCATAGCAGTTGATATTGCAATAGGGCTGCAATACTTGCATGAACACACACAACCATGTATAGTCCATAGGAACATCAAATCAAGTAACATTCTTCTTGACTCAAAATTTAAGGCCAAGATAGCAAATTTTTCTGTTGCAAGAACTACAAAGAATCCTATGATAACAAAAGTTGATGTTTTAGGTTATGGAATGGTTCTGATGGAGCTAATAACAGGAAAGAAGTTTTTGTCGTATAGCGAACATAGCGAGGTGAATATGTTGTGGAAAGATTTTAAGTGTGTGTTTGATACAGAACAAAAGAGAGAAGAAATTGTTAGAAGATGGATGGATCCTAAGTTAGGGAGGTTTTATAATGTTGTTGAAGCTCTTAGTTTATTCACTTTGGCAGTGAATTGCATAGAAGAACAACCTTTGTTAAGACCAACTATGGGAGAAGTTGTTCTTAGTCTTTCTCTTCTCACTCAACCCTCTCCTACTTTGTTAGAGGTGTCTTGGACTTATGGATTAGATGTAGAGGTTGCTGAAATGGTTACTCCCATCATAGCTCGTTGATTGAGGGAATGCAAATTCAGTAATTGAATTAAAAATTTGGTATTTTGTTTTTTTTAACAAGAAATTTGGTATATTGTTGATGCTTTCCTTAGTATATTAGTAACAATCTCATGTGTCCTCGTGACCTTAACTCAGTTGGTATGGACAATTCATAATATATGTAAGGTCTGGGGTTC</TRANSCRIPT_SEQUENCE> </TU> </TIGR> |
| |
Input:String | |
Name:TIGRXML |
<?xml version='1.0' encoding='ISO-8859-1'?> <TIGR> <TU> <FEAT_NAME>1232.t00016</FEAT_NAME> <DATE>10-Dec-2004</DATE> <GENE_INFO> <LOCUS>AC148994_16.1</LOCUS> <COM_NAME CURATED="0" IS_PRIMARY="1">Protein kinase; Serine/threonine protein kinase, active site; Peptidoglycan-binding LysM; Protein kinase-like; Tyrosine protein kinase</COM_NAME> <PUB_COMMENT> </PUB_COMMENT> <IS_PSEUDOGENE>0</IS_PSEUDOGENE> <FUNCT_ANNOT_EVIDENCE TYPE="CURATED"/> <DATE>10-Dec-2004</DATE> </GENE_INFO> <COORDSET> <END5>70537</END5> <END3>67847</END3> </COORDSET> <MODEL COMMENT="IMGA|AC148994_16.1 AC148994.3 70537-67847 E EGN_Mt041209 20041210"> <FEAT_NAME>1232.m00016</FEAT_NAME> <CDNA_SUPPORT> <ACCESSION>spans 31 percent of the model length</ACCESSION> <ACCESSION ANNOT_INCORP="1" DBXREF="LjGmEST|BI471529" IS_FLI="0" UNIQUE_TO_ISOFORM="1">cDNA support spans 15 percent of the model</ACCESSION> <ACCESSION ANNOT_INCORP="1" DBXREF="MENS|MtD13882_GC" IS_FLI="0" UNIQUE_TO_ISOFORM="1">cDNA support spans 14 percent of the model</ACCESSION> <ACCESSION ANNOT_INCORP="1" DBXREF="MtEST|BI271817" IS_FLI="0" UNIQUE_TO_ISOFORM="1">cDNA support spans 13 percent of the model</ACCESSION> <ACCESSION ANNOT_INCORP="1" DBXREF="MENS|MtD23795_GC" IS_FLI="0" UNIQUE_TO_ISOFORM="1">cDNA support spans 1 percent of the model</ACCESSION> <ACCESSION ANNOT_INCORP="1" DBXREF="MtEST|BM815591" IS_FLI="0" UNIQUE_TO_ISOFORM="1">cDNA support spans 1 percent of the model</ACCESSION> </CDNA_SUPPORT> <DATE>10-Dec-2004</DATE> <COORDSET> <END5>70502</END5> <END3>67958</END3> </COORDSET> <MODEL_ATTRIBUTE> <ATTRIBUTE_TYPE METHOD="MW,molwt_update.dbi"> <ATT_SCORE DESC="Molecular Weight">76301.83</ATT_SCORE> </ATTRIBUTE_TYPE> <ATTRIBUTE_TYPE METHOD="PI,molwt_update.dbi"> <ATT_SCORE DESC="Isoelectric point">6.9186</ATT_SCORE> </ATTRIBUTE_TYPE> <ATTRIBUTE_TYPE METHOD="targetP,targetP_update.dbi"> <ATT_SCORE DESC="Location">secreted</ATT_SCORE> <ATT_SCORE DESC="c:m:s:o scores">0.004:0.068:0.853:0.176</ATT_SCORE> <ATT_SCORE DESC="RC-value">2</ATT_SCORE> <ATT_SCORE DESC="network:peplen">plant:150</ATT_SCORE> <ATT_SCORE DESC="c:m:s:o cutoffs">0:0:0:0</ATT_SCORE> </ATTRIBUTE_TYPE> <ATTRIBUTE_TYPE METHOD="EGN_Mt041209"> <ATT_SCORE DESC="IMGA gene call evidence class">E</ATT_SCORE> </ATTRIBUTE_TYPE> </MODEL_ATTRIBUTE> <MODEL_EVIDENCE> <EVIDENCE_TYPE> <SEQUENCE_DB_MATCH> <SEARCH_DB DB_NAME="MENS|MtAA" DB_TYPE="Database of peptides predicted from Medicago truncatula EST-Clusters"> <SEQ_ELEMENT ACCESSION="MtC93142_1_AA" DESCRIPTION="spans 73 percent of the exon" FEAT_TYPE="mth2-3c7.161.2:Exon" METHOD="blastx" SCORE="73"> <ASMBL_COORDS> <COORDSET> <END5>79229</END5> <END3>78043</END3> </COORDSET> </ASMBL_COORDS> </SEQ_ELEMENT> <SEQ_ELEMENT ACCESSION="MtD01246_1_AA" DESCRIPTION="spans 73 percent of the exon" FEAT_TYPE="mth2-3c7.161.2:Exon" METHOD="blastx" SCORE="73"> <ASMBL_COORDS> <COORDSET> <END5>79229</END5> <END3>78043</END3> </COORDSET> </ASMBL_COORDS> </SEQ_ELEMENT> <SEQ_ELEMENT ACCESSION="MtC20169_1_AA" DESCRIPTION="spans 73 percent of the exon" FEAT_TYPE="mth2-3c7.161.2:Exon" METHOD="blastx" SCORE="73"> <ASMBL_COORDS> <COORDSET> <END5>79229</END5> <END3>78043</END3> </COORDSET> </ASMBL_COORDS> </SEQ_ELEMENT> <SEQ_ELEMENT ACCESSION="MtC93221_1_AA" DESCRIPTION="spans 77 percent of the exon" FEAT_TYPE="mth2-3c7.161.1:Exon" METHOD="blastx" SCORE="77"> <ASMBL_COORDS> <COORDSET> <END5>80672</END5> <END3>79820</END3> </COORDSET> </ASMBL_COORDS> </SEQ_ELEMENT> </SEARCH_DB> </SEQUENCE_DB_MATCH> </EVIDENCE_TYPE> </MODEL_EVIDENCE> <EXON> <FEAT_NAME>1232.e00059</FEAT_NAME> <DATE>Dec 11 2004 12:04AM</DATE> <COORDSET> <END5>70537</END5> <END3>69629</END3> </COORDSET> <CDS> <FEAT_NAME>1232.c00059</FEAT_NAME> <DATE>Dec 11 2004 12:04AM</DATE> <COORDSET> <END5>70502</END5> <END3>69629</END3> </COORDSET> </CDS> <UTRS> <LEFT_UTR> <COORDSET> <END5>70537</END5> <END3>70503</END3> </COORDSET> </LEFT_UTR> </UTRS> </EXON> <EXON> <FEAT_NAME>1232.e00060</FEAT_NAME> <DATE>Dec 11 2004 12:04AM</DATE> <COORDSET> <END5>69138</END5> <END3>67847</END3> </COORDSET> <CDS> <FEAT_NAME>1232.c00060</FEAT_NAME> <DATE>Dec 11 2004 12:04AM</DATE> <COORDSET> <END5>69138</END5> <END3>67958</END3> </COORDSET> </CDS> <UTRS> <RIGHT_UTR> <COORDSET> <END5>67957</END5> <END3>67847</END3> </COORDSET> </RIGHT_UTR> </UTRS> </EXON> <CDS_SEQUENCE>ATGAATACCTTGGATCTTAAACTACACCTCAAAATTGAAGTGCAACTCATCAAACTCATGAAGTTTCTTTATCTTTACATTCTCTTATGTATGTTACCTTACTCAATCAACTGCCAACAGATATTACTTAACACCACTGTCACTGATTGCTCAGGCACCCCTTCAGCACCAAAAGGATACCTATGCAATAGTCCTCAAAACTCATGCAATTCATTCTTAACTTTCAGGTCAAAACCTTCTTATGACAACCCTACAAGTATTGCTTACCTTCTTGGCTCAGAAGCATCGACCATAGCCTCAATCAACAACATCTCAAGAAATGAAAAACTTCCAACCAATAAAACAATCATTGTCCCTATCTTGTGCTCATGTTCTGGAAATATCTACCAACATAACACTCCTTACACTGTCCAAAAAGGTGATACATACTTTCACTTGGTAAATGAAACTTACCAAAGCCTCACAACATGTCAAGCTTTGAAGGGTCAGAATTATTATGCTTCTGAAAACATTGCAATTGGTGCCGAGGTAACAGTTCCAGTACTTTGTGCTTGTCCTACAACAACACAGATGGCGAAAGGGATCACTTCCTTGCTGGTTTACATAGTGAACTATGGTGAAACTGTTAAGTCTATAGGAGAGGCTTATGGTGTTGATGAACAAAGCATATTAGAGGCAAATGAGTTGCAACCAAGTGAAAACAGAAGTGTGATTCTCTTTGCGTTGACACCGATATTACTTCCTCTTAGAGGCAAGAGCTGCAAAGAGGATCCTGATAGTTTCTACTGTACTTGTTCTCAGGGAAGGCTAGCAGATGGAAGTTGTAATGAATCCCATGGTCAAAAGTTTCCTGCCAAGTTGGTTGCTGCATTAGGTGTTGGTATTGGTGCAGGCTTTCTGGTATTGTTTCTGCTTAGTTACAGGTTATATCAATACATAAAGAAAAAGAGAGCGAGTATTCGTAAGGAAAAGTTATTCAGGCAAAACGGTGGTTACTTGTTACAAGAGAAGTTATCATCATATGGAAATGGAGAAATGGCAAAGCTTTTTACAGCAGAGGAGCTCCAAAGAGCAACAGATGACTACAACCAAAGTAGGTTTCTTGGTCAAGGCGGCTATGGCACAGTGTACAAAGGAATGCTACCAGATGGAACCATAGTCGCAGTTAAAAAGTCAAAACACCTTGACAGAAACCAAATAGAAACGTTTGTCAACGAAGTAGTCATCTTATCTCAGATCAACCACAGGAACATTGTCAAACTTTTAGGTTGTTGTCTTGAGACAGAAACTCCATTACTTGTCTATGAATACATTCACAGCGGAACTCTTTCCCAACATATCCATGGGAAAGACCGTGATTCATCCCTTTCATGGGAAAGTCGCCTTAGAATTGCATGTGAGGTTGCCGGAGCAGTGACATATATGCATTTCTCAGCTTCTATTCCAATCTTCCATAGAGACATAAAACCAAGTAACATACTCCTAGACAATAACTATAGTGCCAAAGTGTCTGATTTTGGAACATCTAGATCAATCCCATTAGATAAGACTCATTTAACCACAGCAGTAGGAGGTACTTTTGGGTACATGGATCCTGAATATTTTCAGTCAAGTCAATTTACAGATAAGAGTGATGTATATAGTTTCGGCGTGGTGCTTGTTGAGCTTATAACCGGTAGAAAGCCAATAACATTCAATGATGAAGATGAGGGTCAGAATATGACGGCACATTTCATTTCAGTGATGAAGGAAAACCAACTTCCTCAAATTTTAGATAACGCATTGGTTAATGAAGCAAGGAAAGATGACATTCTAGCTATTGCAAATCTTGCAATGAGATGTTTGAGACTTAATGGTAAGAAAAGACCAACAATGAAAGAGGTTTCAATGGAATTAGAAGCACTAAGAAAGGTACAGAGTTCCTTACATATCAAAGATGATCAAGAATCACCAAGTGATGAACAATCACTTAGGCATACAACTAATGATACATTTCATGAGTCTACAGTGGAAAGCTTTTCGCTATCCTCGCAAATGGAGTCCACATACTTCTAA</CDS_SEQUENCE> <PROTEIN_SEQUENCE>MNTLDLKLHLKIEVQLIKLMKFLYLYILLCMLPYSINCQQILLNTTVTDCSGTPSAPKGYLCNSPQNSCNSFLTFRSKPSYDNPTSIAYLLGSEASTIASINNISRNEKLPTNKTIIVPILCSCSGNIYQHNTPYTVQKGDTYFHLVNETYQSLTTCQALKGQNYYASENIAIGAEVTVPVLCACPTTTQMAKGITSLLVYIVNYGETVKSIGEAYGVDEQSILEANELQPSENRSVILFALTPILLPLRGKSCKEDPDSFYCTCSQGRLADGSCNESHGQKFPAKLVAALGVGIGAGFLVLFLLSYRLYQYIKKKRASIRKEKLFRQNGGYLLQEKLSSYGNGEMAKLFTAEELQRATDDYNQSRFLGQGGYGTVYKGMLPDGTIVAVKKSKHLDRNQIETFVNEVVILSQINHRNIVKLLGCCLETETPLLVYEYIHSGTLSQHIHGKDRDSSLSWESRLRIACEVAGAVTYMHFSASIPIFHRDIKPSNILLDNNYSAKVSDFGTSRSIPLDKTHLTTAVGGTFGYMDPEYFQSSQFTDKSDVYSFGVVLVELITGRKPITFNDEDEGQNMTAHFISVMKENQLPQILDNALVNEARKDDILAIANLAMRCLRLNGKKRPTMKEVSMELEALRKVQSSLHIKDDQESPSDEQSLRHTTNDTFHESTVESFSLSSQMESTYF</PROTEIN_SEQUENCE> </MODEL> <TRANSCRIPT_SEQUENCE>TCAAGGGTGATATAAACATGAGGGTAATAATATGAATGAATACCTTGGATCTTAAACTACACCTCAAAATTGAAGTGCAACTCATCAAACTCATGAAGTTTCTTTATCTTTACATTCTCTTATGTATGTTACCTTACTCAATCAACTGCCAACAGATATTACTTAACACCACTGTCACTGATTGCTCAGGCACCCCTTCAGCACCAAAAGGATACCTATGCAATAGTCCTCAAAACTCATGCAATTCATTCTTAACTTTCAGGTCAAAACCTTCTTATGACAACCCTACAAGTATTGCTTACCTTCTTGGCTCAGAAGCATCGACCATAGCCTCAATCAACAACATCTCAAGAAATGAAAAACTTCCAACCAATAAAACAATCATTGTCCCTATCTTGTGCTCATGTTCTGGAAATATCTACCAACATAACACTCCTTACACTGTCCAAAAAGGTGATACATACTTTCACTTGGTAAATGAAACTTACCAAAGCCTCACAACATGTCAAGCTTTGAAGGGTCAGAATTATTATGCTTCTGAAAACATTGCAATTGGTGCCGAGGTAACAGTTCCAGTACTTTGTGCTTGTCCTACAACAACACAGATGGCGAAAGGGATCACTTCCTTGCTGGTTTACATAGTGAACTATGGTGAAACTGTTAAGTCTATAGGAGAGGCTTATGGTGTTGATGAACAAAGCATATTAGAGGCAAATGAGTTGCAACCAAGTGAAAACAGAAGTGTGATTCTCTTTGCGTTGACACCGATATTACTTCCTCTTAGAGGCAAGAGCTGCAAAGAGGATCCTGATAGTTTCTACTGTACTTGTTCTCAGGGAAGGCTAGCAGATGGAAGTTGTAATGAATCCCATGGTCAAAAGTTTCCTGCCAAGTTGGTTGCTGCATTAGGTAATATTGGACTAAAATACCCTTATTTAATTTCTAGTATTTGTAATTAATTGTAACAGAAATGTCTAAGTTCTTTGTCACAACTAAGGGTATAGCTGAAAAATCACTCACTAGACATTGGATTTCTAAGGTATCAATAGTTTTGAAACAAAAGGAAGTGATAGATTAGAAAACAAATTGAGTTGTGAATTAATGCTAGTTTTTTTTAATCCTTTTTTGGCCCCTAGAGAGAAATAGACTAAACATGTAATAGGACTAACATCCTCACCAGCCCCTTCCTCCTCTCAAGACTTTGGCGAACTTTCAGCCAAAAGATATTTAATTTAACGACCAAGAGTACTTACTCCCAGTCATTGCATCAAATCAACGACAGATTTCGCTGGTGAGGCAAGATGGACTGCAAGTAAAAATGGAGATGTTTGTTACTAGTTCCATGTCAGTAGTCCTTGCTTCTCCCTTCAATTTTGAAAATGTCTTTATGTATTTGCAGGTGTTGGTATTGGTGCAGGCTTTCTGGTATTGTTTCTGCTTAGTTACAGGTTATATCAATACATAAAGAAAAAGAGAGCGAGTATTCGTAAGGAAAAGTTATTCAGGCAAAACGGTGGTTACTTGTTACAAGAGAAGTTATCATCATATGGAAATGGAGAAATGGCAAAGCTTTTTACAGCAGAGGAGCTCCAAAGAGCAACAGATGACTACAACCAAAGTAGGTTTCTTGGTCAAGGCGGCTATGGCACAGTGTACAAAGGAATGCTACCAGATGGAACCATAGTCGCAGTTAAAAAGTCAAAACACCTTGACAGAAACCAAATAGAAACGTTTGTCAACGAAGTAGTCATCTTATCTCAGATCAACCACAGGAACATTGTCAAACTTTTAGGTTGTTGTCTTGAGACAGAAACTCCATTACTTGTCTATGAATACATTCACAGCGGAACTCTTTCCCAACATATCCATGGGAAAGACCGTGATTCATCCCTTTCATGGGAAAGTCGCCTTAGAATTGCATGTGAGGTTGCCGGAGCAGTGACATATATGCATTTCTCAGCTTCTATTCCAATCTTCCATAGAGACATAAAACCAAGTAACATACTCCTAGACAATAACTATAGTGCCAAAGTGTCTGATTTTGGAACATCTAGATCAATCCCATTAGATAAGACTCATTTAACCACAGCAGTAGGAGGTACTTTTGGGTACATGGATCCTGAATATTTTCAGTCAAGTCAATTTACAGATAAGAGTGATGTATATAGTTTCGGCGTGGTGCTTGTTGAGCTTATAACCGGTAGAAAGCCAATAACATTCAATGATGAAGATGAGGGTCAGAATATGACGGCACATTTCATTTCAGTGATGAAGGAAAACCAACTTCCTCAAATTTTAGATAACGCATTGGTTAATGAAGCAAGGAAAGATGACATTCTAGCTATTGCAAATCTTGCAATGAGATGTTTGAGACTTAATGGTAAGAAAAGACCAACAATGAAAGAGGTTTCAATGGAATTAGAAGCACTAAGAAAGGTACAGAGTTCCTTACATATCAAAGATGATCAAGAATCACCAAGTGATGAACAATCACTTAGGCATACAACTAATGATACATTTCATGAGTCTACAGTGGAAAGCTTTTCGCTATCCTCGCAAATGGAGTCCACATACTTCTAAAATGCCAGATTGATACATATTATTGATTTATTATGCTTTCTTCTACATTTTCAACTTATGGACTAAGGTATATCCTGGAGATGGCTGAGGATACACATGACAATTTTTTTA</TRANSCRIPT_SEQUENCE> </TU> </TIGR> |