Input:String

Name:TIGRXML

<?xml version="1.0" encoding="ISO-8859-1"?>
<TIGR>
      <TU>
                    <FEAT_NAME>1197.t00015</FEAT_NAME>
                    <DATE>10-Dec-2004</DATE>
                    <GENE_INFO>
                        <LOCUS>AC148241_15.1</LOCUS>
                        <COM_NAME CURATED="0" IS_PRIMARY="1">Protein kinase; Peptidoglycan-binding LysM; Protein kinase-like; Serine/threonine protein kinase; Tyrosine protein kinase</COM_NAME>
                        <PUB_COMMENT> </PUB_COMMENT>
                        <IS_PSEUDOGENE>0</IS_PSEUDOGENE>
                        <FUNCT_ANNOT_EVIDENCE TYPE="CURATED"/>
                        <DATE>10-Dec-2004</DATE>
                    </GENE_INFO>
                    <COORDSET>
                        <END5>82352</END5>
                        <END3>84348</END3>
                    </COORDSET>
                    <MODEL COMMENT="IMGA|AC148241_15.1 AC148241.21 82352-84348 H EGN_Mt041209 20041210">
                        <FEAT_NAME>1197.m00015</FEAT_NAME>
                        <DATE>10-Dec-2004</DATE>
                        <COORDSET>
                            <END5>82400</END5>
                            <END3>84172</END3>
                        </COORDSET>
                        <MODEL_ATTRIBUTE>
                            <ATTRIBUTE_TYPE METHOD="MW,molwt_update.dbi">
                                <ATT_SCORE DESC="Molecular Weight">66343.86</ATT_SCORE>
                            </ATTRIBUTE_TYPE>
                            <ATTRIBUTE_TYPE METHOD="PI,molwt_update.dbi">
                                <ATT_SCORE DESC="Isoelectric point">8.0067</ATT_SCORE>
                            </ATTRIBUTE_TYPE>
                            <ATTRIBUTE_TYPE METHOD="SP-HMM,signalP-2.0">
                                <ATT_SCORE DESC="HMM-position">26</ATT_SCORE>
                                <ATT_SCORE DESC="HMM-prediction">Signal peptide</ATT_SCORE>
                                <ATT_SCORE DESC="HMM-SPprob">0.918</ATT_SCORE>
                                <ATT_SCORE DESC="HMM-SAprob">0.007</ATT_SCORE>
                                <ATT_SCORE DESC="HMM-cleavprob">0.605</ATT_SCORE>
                            </ATTRIBUTE_TYPE>
                            <ATTRIBUTE_TYPE METHOD="SP-NN,signalP-2.0">
                                <ATT_SCORE DESC="NN-position">26</ATT_SCORE>
                                <ATT_SCORE DESC="NN-cleavsite">ANG-KN</ATT_SCORE>
                                <ATT_SCORE DESC="NN-maxY">0.679</ATT_SCORE>
                                <ATT_SCORE DESC="NN-meanS">0.700</ATT_SCORE>
                            </ATTRIBUTE_TYPE>
                            <ATTRIBUTE_TYPE METHOD="targetP,targetP_update.dbi">
                                <ATT_SCORE DESC="Location">secreted</ATT_SCORE>
                                <ATT_SCORE DESC="c:m:s:o scores">0.083:0.008:0.956:0.036</ATT_SCORE>
                                <ATT_SCORE DESC="RC-value">1</ATT_SCORE>
                                <ATT_SCORE DESC="network:peplen">plant:150</ATT_SCORE>
                                <ATT_SCORE DESC="c:m:s:o cutoffs">0:0:0:0</ATT_SCORE>
                            </ATTRIBUTE_TYPE>
                            <ATTRIBUTE_TYPE METHOD="EGN_Mt041209">
                                <ATT_SCORE DESC="IMGA gene call evidence class">H</ATT_SCORE>
                            </ATTRIBUTE_TYPE>
                        </MODEL_ATTRIBUTE>
                        <MODEL_EVIDENCE>
                            <EVIDENCE_TYPE>
                                <SEQUENCE_DB_MATCH>
                                    <SEARCH_DB DB_NAME="MENS|MtAA" DB_TYPE="Database of peptides predicted from Medicago truncatula EST-Clusters">
                                        <SEQ_ELEMENT ACCESSION="MtD11480_1_AA" DESCRIPTION="spans 30 percent of the exon" FEAT_TYPE="mth2-14m21.151.1:Exon" METHOD="blastx" SCORE="30">
                                            <ASMBL_COORDS>
                                                <COORDSET>
                                                    <END5>82400</END5>
                                                    <END3>84172</END3>
                                                </COORDSET>
                                            </ASMBL_COORDS>
                                        </SEQ_ELEMENT>
                                    </SEARCH_DB>
                                    <SEARCH_DB DB_NAME="ProDom" DB_TYPE="Protein Domain database (subset of families with at least two domains)">
                                        <SEQ_ELEMENT ACCESSION="pd:PD000001;sp:O81906:O81906_ARATH" DESCRIPTION="spans 26 percent of the exon" FEAT_TYPE="mth2-14m21.151.1:Exon" METHOD="blastx" SCORE="26">
                                            <ASMBL_COORDS>
                                                <COORDSET>
                                                    <END5>82400</END5>
                                                    <END3>84172</END3>
                                                </COORDSET>
                                            </ASMBL_COORDS>
                                        </SEQ_ELEMENT>
                                        <SEQ_ELEMENT ACCESSION="pd:PD000001;sp:Q9S7D9:Q9S7D9_ARATH" DESCRIPTION="spans 26 percent of the exon" FEAT_TYPE="mth2-14m21.151.1:Exon" METHOD="blastx" SCORE="26">
                                            <ASMBL_COORDS>
                                                <COORDSET>
                                                    <END5>82400</END5>
                                                    <END3>84172</END3>
                                                </COORDSET>
                                            </ASMBL_COORDS>
                                        </SEQ_ELEMENT>
                                    </SEARCH_DB>
                                </SEQUENCE_DB_MATCH>
                            </EVIDENCE_TYPE>
                        </MODEL_EVIDENCE>
                        <EXON>
                            <FEAT_NAME>1197.e00050</FEAT_NAME>
                            <DATE>Dec 10 2004 11:28PM</DATE>
                            <COORDSET>
                                <END5>82352</END5>
                                <END3>84348</END3>
                            </COORDSET>
                            <CDS>
                                <FEAT_NAME>1197.c00050</FEAT_NAME>
                                <DATE>Dec 10 2004 11:28PM</DATE>
                                <COORDSET>
                                    <END5>82400</END5>
                                    <END3>84172</END3>
                                </COORDSET>
                            </CDS>
                            <UTRS>
                                <LEFT_UTR>
                                    <COORDSET>
                                        <END5>82352</END5>
                                        <END3>82399</END3>
                                    </COORDSET>
                                </LEFT_UTR>
                                <RIGHT_UTR>
                                    <COORDSET>
                                        <END5>84173</END5>
                                        <END3>84348</END3>
                                    </COORDSET>
                                </RIGHT_UTR>
                            </UTRS>
                        </EXON>
                        <CDS_SEQUENCE>ATGGTTTCTTCCTTTTTTCATACACTCATATTCTTTTCTGCCACCCATATCCTACTTCAATTGCCACAAGCCAATGGAAAAAACTTCTCATGTACTTTGAATTCCTCTCCTTCATGTGACACATATGTTGCATACTTTGCTAACTCTCCAAACTTTTTAACCCTCACAGCCATATCTGATATATTTGACACCAGTCCTCAATCCATTGCAAGAGCAAGCAACATAAAAGATGAAAATATGAACCTCATTCATGGCCAACTTTTGCTTATACCTATAACTTGTGGTTGCAATGGAAATGGAAACTACTCTTTTGCCAATATCTCACACTTAATCAAAGAAAGTGAAAGTTACTATTATCTTTCGACCATTTCGTATCAGAATCTCACTAATTGGCAGACAGTGGAAGATTCAAACCCTAATCTGAATCCATATTTGTTGAAAATAGGCACCAAAATAAACATCCCTTTGTTTTGTAGGTGCCCTTCAAACTATTTTGCAAAAGGGATAGAGTATCTCATTACTTATGTTTGGCAGCCTAATGATAATCTTACACTTGTAGCTTCCAAGCTTGGTGCATCACCAAAGGACATAATCACAGCAAATACAAACAACTTTGGTCAAAACTTCACTGTTGCAATCAACCTTCCAGTTTTTATTCCTGTGAAAAACTTACCAGCTCTTTCTCAATCATACTATTCTTCAAGTGAAAGAAAGAGAATCAATCATTTTTCTATTATAATTTCCATTGGTATATGTCTAGGATGCACTATTCTGATTTCACTATTATTATTACTTTTTTATGTTTATTGTTTAAGGAAGAGAAAGGCTTGTGAGAATAAGTGTGTGCCTTCTGTGGAGATAACAGATAAGTTAATTTCCGAAGTTTCAAATTATGTAAGTAAGCCAACAGTGTATGAAGTTGGTATGATTATGAAAGCTACCATGAACCTTAATGAAATGTGTAAGATAGGGAAATCAGTGTACAAAGCTAAAATAGATGGTTTGGTTTTGGCTGTGAAAAATGTAAAGGGACATATCACAGTCACAGAAGAGTTGATGATTTTACAAAAGGTAAATCATGCAAATCTAGTGAAACTAGTAGGTGTCTCTTCAGGATATGATGGAAATCACTTTCTTGTATATGAATATGCTGAAAATGGATCTCTTTATAACTGGTTATTATCTGAGTTTTGCACTCTTAGTTGGAGTCAGAGGTTAAGCATAGCAGTTGATATTGCAATAGGGCTGCAATACTTGCATGAACACACACAACCATGTATAGTCCATAGGAACATCAAATCAAGTAACATTCTTCTTGACTCAAAATTTAAGGCCAAGATAGCAAATTTTTCTGTTGCAAGAACTACAAAGAATCCTATGATAACAAAAGTTGATGTTTTAGGTTATGGAATGGTTCTGATGGAGCTAATAACAGGAAAGAAGTTTTTGTCGTATAGCGAACATAGCGAGGTGAATATGTTGTGGAAAGATTTTAAGTGTGTGTTTGATACAGAACAAAAGAGAGAAGAAATTGTTAGAAGATGGATGGATCCTAAGTTAGGGAGGTTTTATAATGTTGTTGAAGCTCTTAGTTTATTCACTTTGGCAGTGAATTGCATAGAAGAACAACCTTTGTTAAGACCAACTATGGGAGAAGTTGTTCTTAGTCTTTCTCTTCTCACTCAACCCTCTCCTACTTTGTTAGAGGTGTCTTGGACTTATGGATTAGATGTAGAGGTTGCTGAAATGGTTACTCCCATCATAGCTCGTTGA</CDS_SEQUENCE>
                        <PROTEIN_SEQUENCE>MVSSFFHTLIFFSATHILLQLPQANGKNFSCTLNSSPSCDTYVAYFANSPNFLTLTAISDIFDTSPQSIARASNIKDENMNLIHGQLLLIPITCGCNGNGNYSFANISHLIKESESYYYLSTISYQNLTNWQTVEDSNPNLNPYLLKIGTKINIPLFCRCPSNYFAKGIEYLITYVWQPNDNLTLVASKLGASPKDIITANTNNFGQNFTVAINLPVFIPVKNLPALSQSYYSSSERKRINHFSIIISIGICLGCTILISLLLLLFYVYCLRKRKACENKCVPSVEITDKLISEVSNYVSKPTVYEVGMIMKATMNLNEMCKIGKSVYKAKIDGLVLAVKNVKGHITVTEELMILQKVNHANLVKLVGVSSGYDGNHFLVYEYAENGSLYNWLLSEFCTLSWSQRLSIAVDIAIGLQYLHEHTQPCIVHRNIKSSNILLDSKFKAKIANFSVARTTKNPMITKVDVLGYGMVLMELITGKKFLSYSEHSEVNMLWKDFKCVFDTEQKREEIVRRWMDPKLGRFYNVVEALSLFTLAVNCIEEQPLLRPTMGEVVLSLSLLTQPSPTLLEVSWTYGLDVEVAEMVTPIIAR</PROTEIN_SEQUENCE>
                    </MODEL>
                    <TRANSCRIPT_SEQUENCE>TCTTCCCTTGTGCCTTTCATTTGTTCACCACCTTTAATTTTGACAACAATGGTTTCTTCCTTTTTTCATACACTCATATTCTTTTCTGCCACCCATATCCTACTTCAATTGCCACAAGCCAATGGAAAAAACTTCTCATGTACTTTGAATTCCTCTCCTTCATGTGACACATATGTTGCATACTTTGCTAACTCTCCAAACTTTTTAACCCTCACAGCCATATCTGATATATTTGACACCAGTCCTCAATCCATTGCAAGAGCAAGCAACATAAAAGATGAAAATATGAACCTCATTCATGGCCAACTTTTGCTTATACCTATAACTTGTGGTTGCAATGGAAATGGAAACTACTCTTTTGCCAATATCTCACACTTAATCAAAGAAAGTGAAAGTTACTATTATCTTTCGACCATTTCGTATCAGAATCTCACTAATTGGCAGACAGTGGAAGATTCAAACCCTAATCTGAATCCATATTTGTTGAAAATAGGCACCAAAATAAACATCCCTTTGTTTTGTAGGTGCCCTTCAAACTATTTTGCAAAAGGGATAGAGTATCTCATTACTTATGTTTGGCAGCCTAATGATAATCTTACACTTGTAGCTTCCAAGCTTGGTGCATCACCAAAGGACATAATCACAGCAAATACAAACAACTTTGGTCAAAACTTCACTGTTGCAATCAACCTTCCAGTTTTTATTCCTGTGAAAAACTTACCAGCTCTTTCTCAATCATACTATTCTTCAAGTGAAAGAAAGAGAATCAATCATTTTTCTATTATAATTTCCATTGGTATATGTCTAGGATGCACTATTCTGATTTCACTATTATTATTACTTTTTTATGTTTATTGTTTAAGGAAGAGAAAGGCTTGTGAGAATAAGTGTGTGCCTTCTGTGGAGATAACAGATAAGTTAATTTCCGAAGTTTCAAATTATGTAAGTAAGCCAACAGTGTATGAAGTTGGTATGATTATGAAAGCTACCATGAACCTTAATGAAATGTGTAAGATAGGGAAATCAGTGTACAAAGCTAAAATAGATGGTTTGGTTTTGGCTGTGAAAAATGTAAAGGGACATATCACAGTCACAGAAGAGTTGATGATTTTACAAAAGGTAAATCATGCAAATCTAGTGAAACTAGTAGGTGTCTCTTCAGGATATGATGGAAATCACTTTCTTGTATATGAATATGCTGAAAATGGATCTCTTTATAACTGGTTATTATCTGAGTTTTGCACTCTTAGTTGGAGTCAGAGGTTAAGCATAGCAGTTGATATTGCAATAGGGCTGCAATACTTGCATGAACACACACAACCATGTATAGTCCATAGGAACATCAAATCAAGTAACATTCTTCTTGACTCAAAATTTAAGGCCAAGATAGCAAATTTTTCTGTTGCAAGAACTACAAAGAATCCTATGATAACAAAAGTTGATGTTTTAGGTTATGGAATGGTTCTGATGGAGCTAATAACAGGAAAGAAGTTTTTGTCGTATAGCGAACATAGCGAGGTGAATATGTTGTGGAAAGATTTTAAGTGTGTGTTTGATACAGAACAAAAGAGAGAAGAAATTGTTAGAAGATGGATGGATCCTAAGTTAGGGAGGTTTTATAATGTTGTTGAAGCTCTTAGTTTATTCACTTTGGCAGTGAATTGCATAGAAGAACAACCTTTGTTAAGACCAACTATGGGAGAAGTTGTTCTTAGTCTTTCTCTTCTCACTCAACCCTCTCCTACTTTGTTAGAGGTGTCTTGGACTTATGGATTAGATGTAGAGGTTGCTGAAATGGTTACTCCCATCATAGCTCGTTGATTGAGGGAATGCAAATTCAGTAATTGAATTAAAAATTTGGTATTTTGTTTTTTTTAACAAGAAATTTGGTATATTGTTGATGCTTTCCTTAGTATATTAGTAACAATCTCATGTGTCCTCGTGACCTTAACTCAGTTGGTATGGACAATTCATAATATATGTAAGGTCTGGGGTTC</TRANSCRIPT_SEQUENCE>
                </TU>
      </TIGR>