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<?xml version='1.0' encoding='ISO-8859-1'?> <TIGR> <TU> <FEAT_NAME>802.t00003</FEAT_NAME> <DATE>10-Dec-2004</DATE> <GENE_INFO> <LOCUS>AC126779_3.1</LOCUS> <COM_NAME CURATED="0" IS_PRIMARY="1">Protein kinase; Protein kinase-like; Peptidoglycan-binding LysM; Serine/threonine protein kinase; Tyrosine protein kinase; Tyrosine protein kinase, active site</COM_NAME> <PUB_COMMENT> </PUB_COMMENT> <IS_PSEUDOGENE>0</IS_PSEUDOGENE> <FUNCT_ANNOT_EVIDENCE TYPE="CURATED"/> <DATE>10-Dec-2004</DATE> </GENE_INFO> <COORDSET> <END5>24410</END5> <END3>22366</END3> </COORDSET> <MODEL COMMENT="IMGA|AC126779_3.1 AC126779.18 24410-22366 E EGN_Mt041209 20041210"> <FEAT_NAME>802.m00003</FEAT_NAME> <CDNA_SUPPORT> <ACCESSION>spans 29 percent of the model length</ACCESSION> <ACCESSION ANNOT_INCORP="1" DBXREF="MENS|MtD11480_GC" IS_FLI="0" UNIQUE_TO_ISOFORM="1">cDNA support spans 29 percent of the model</ACCESSION> <ACCESSION ANNOT_INCORP="1" DBXREF="MtEST|BE204912" IS_FLI="0" UNIQUE_TO_ISOFORM="1">cDNA support spans 29 percent of the model</ACCESSION> </CDNA_SUPPORT> <DATE>10-Dec-2004</DATE> <COORDSET> <END5>24375</END5> <END3>22588</END3> </COORDSET> <MODEL_ATTRIBUTE> <ATTRIBUTE_TYPE METHOD="GES,TMHMM2.0"> <ATT_SCORE DESC="count">2</ATT_SCORE> <ATT_SCORE DESC="coords">10-32:247-269</ATT_SCORE> </ATTRIBUTE_TYPE> <ATTRIBUTE_TYPE METHOD="MW,molwt_update.dbi"> <ATT_SCORE DESC="Molecular Weight">66013.82</ATT_SCORE> </ATTRIBUTE_TYPE> <ATTRIBUTE_TYPE METHOD="PI,molwt_update.dbi"> <ATT_SCORE DESC="Isoelectric point">7.6472</ATT_SCORE> </ATTRIBUTE_TYPE> <ATTRIBUTE_TYPE METHOD="SP-HMM,signalP-2.0"> <ATT_SCORE DESC="HMM-position">27</ATT_SCORE> <ATT_SCORE DESC="HMM-prediction">Signal peptide</ATT_SCORE> <ATT_SCORE DESC="HMM-SPprob">1.000</ATT_SCORE> <ATT_SCORE DESC="HMM-SAprob">0.000</ATT_SCORE> <ATT_SCORE DESC="HMM-cleavprob">0.990</ATT_SCORE> </ATTRIBUTE_TYPE> <ATTRIBUTE_TYPE METHOD="SP-NN,signalP-2.0"> <ATT_SCORE DESC="NN-position">27</ATT_SCORE> <ATT_SCORE DESC="NN-cleavsite">ISA-QP</ATT_SCORE> <ATT_SCORE DESC="NN-maxY">0.881</ATT_SCORE> <ATT_SCORE DESC="NN-meanS">0.924</ATT_SCORE> </ATTRIBUTE_TYPE> <ATTRIBUTE_TYPE METHOD="targetP,targetP_update.dbi"> <ATT_SCORE DESC="Location">secreted</ATT_SCORE> <ATT_SCORE DESC="c:m:s:o scores">0.027:0.009:0.973:0.016</ATT_SCORE> <ATT_SCORE DESC="RC-value">1</ATT_SCORE> <ATT_SCORE DESC="network:peplen">plant:150</ATT_SCORE> <ATT_SCORE DESC="c:m:s:o cutoffs">0:0:0:0</ATT_SCORE> </ATTRIBUTE_TYPE> <ATTRIBUTE_TYPE METHOD="EGN_Mt041209"> <ATT_SCORE DESC="IMGA gene call evidence class">E</ATT_SCORE> </ATTRIBUTE_TYPE> </MODEL_ATTRIBUTE> <MODEL_EVIDENCE> <EVIDENCE_TYPE> <SEQUENCE_DB_MATCH> <SEARCH_DB DB_NAME="MENS|MtAA" DB_TYPE="Database of peptides predicted from Medicago truncatula EST-Clusters"> <SEQ_ELEMENT ACCESSION="MtD11480_1_AA" DESCRIPTION="spans 31 percent of the exon" FEAT_TYPE="mth2-34m14.31.1:Exon" METHOD="blastx" SCORE="31"> <ASMBL_COORDS> <COORDSET> <END5>24375</END5> <END3>22588</END3> </COORDSET> </ASMBL_COORDS> </SEQ_ELEMENT> </SEARCH_DB> <SEARCH_DB DB_NAME="ProDom" DB_TYPE="Protein Domain database (subset of families with at least two domains)"> <SEQ_ELEMENT ACCESSION="pd:PD000001;sp:Q8RYS1:Q8RYS1_EEEEE" DESCRIPTION="spans 27 percent of the exon" FEAT_TYPE="mth2-34m14.31.1:Exon" METHOD="blastx" SCORE="27"> <ASMBL_COORDS> <COORDSET> <END5>24375</END5> <END3>22588</END3> </COORDSET> </ASMBL_COORDS> </SEQ_ELEMENT> </SEARCH_DB> </SEQUENCE_DB_MATCH> </EVIDENCE_TYPE> </MODEL_EVIDENCE> <EXON> <FEAT_NAME>802.e00006</FEAT_NAME> <DATE>Dec 10 2004 4:50PM</DATE> <COORDSET> <END5>24410</END5> <END3>22366</END3> </COORDSET> <CDS> <FEAT_NAME>802.c00006</FEAT_NAME> <DATE>Dec 10 2004 4:50PM</DATE> <COORDSET> <END5>24375</END5> <END3>22588</END3> </COORDSET> </CDS> <UTRS> <LEFT_UTR> <COORDSET> <END5>24410</END5> <END3>24376</END3> </COORDSET> </LEFT_UTR> <RIGHT_UTR> <COORDSET> <END5>22587</END5> <END3>22366</END3> </COORDSET> </RIGHT_UTR> </UTRS> </EXON> <CDS_SEQUENCE>ATGTCTGCCTTCTTTCTTCCTTCTAGTTCTCATGCTCTTTTTCTTGTCCTCATGTTGTTTTTTCTCACTAACATCTCAGCTCAACCACTATATATAAGTGAAACAAACTTTACATGCCCTGTGGATTCTCCTCCTTCATGTGAAACCTATGTAGCATACAGAGCTCAGTCTCCAAATTTTTTGAGCCTATCTAACATATCTGATATTTTTAATTTGAGTCCTTTACGCATTGCAAAAGCCAGTAACATAGAAGCCGAGGATAAGAAGCTGATTCCAGATCAACTGTTACTAGTACCTGTAACTTGTGGTTGCACTAAAAATCACTCTTTCGCGAATATCACCTACTCAATCAAGCAAGGTGACAACTTCTTCATACTTTCAATCACTTCATACCAGAATCTCACCAATTATCTTGAATTTAAAAATTTCAACCCCAATCTAAGTCCAACTCTATTGCCACTAGACACCAAAGTTTCAGTCCCTTTATTCTGCAAGTGCCCTTCAAAGAATCAATTGAACAAAGGAATAAAGTATCTTATTACTTATGTGTGGCAGGATAATGACAATGTTACCCTTGTTAGTTCAAAGTTTGGTGCATCACAAGTTGAAATGTTAGCTGAAAACAATCATAACTTCACTGCTTCAACCAACCGTTCAGTTTTGATCCCTGTGACAAGTTTACCAAAACTTGATCAACCATCTTCAAATGGAAGAAAAAGCAGCAGTCAAAATCTGGCTCTTATAATTGGTATCAGCCTAGGAAGTGCTTTTTTCATTTTAGTTTTAACACTATCACTTGTGTACGTATATTGTCTCAAAATGAAGAGATTGAATAGAAGTACTTCATCGTCCGAGACTGCAGATAAGTTACTTTCAGGTGTTTCAGGTTATGTAAGCAAGCCAACAATGTATGAAATTGATGCAATCATGGAAGGTACAACGAATCTGAGTGACAATTGTAAGATTGGTGAATCAGTTTACAAGGCTAATATAGATGGTAGAGTTTTAGCAGTGAAAAAAATCAAAAAAGATGCTTCAGAGGAGCTGAAAATTCTGCAGAAGGTAAACCATGGAAATCTTGTGAAACTAATGGGTGTGTCTTCTGACAATGATGGAAACTGTTTTCTGGTCTATGAGTATGCTGAAAATGGATCACTTGAAGAGTGGTTGTTCTCGGAATCTTCGAAAACTTCAAACTCGGTGGTTTCGCTTACATGGTCTCAGAGAATAACCATTGCCATGGATGTTGCAATCGGTCTGCAATACATGCATGAACATACTTATCCACGAATAATCCACAGAGACATCACAACAAGTAATATCCTTCTTGGCTCAAATTTTAAGGCCAAGATAGCGAATTTCGGGATGGCTAGAACTTCAACCAACTCAATGATGCCGAAAATTGATGTTTTCGCTTTTGGGGTGGTTCTAATAGAGTTGTTAACTGGCAAGAAAGCTATGACAACTAAAGAAAATGGTGAGGTTGTTATTCTGTGGAAGGATTTTTGGAAGATTTTTGATCTTGAAGGGAATAGAGAAGAGAGGTTAAGAAAATGGATGGATCCTAAGTTAGAGAGTTTTTATCCTATAGATAATGCTCTAAGTTTGGCTTCTTTGGCAGTAAATTGCACTGCTGATAAATCATTGTCTAGACCAACCATTGCAGAAATTGTTCTTTGTCTTTCTCTTCTCAACCAACCATCATCTGAACCAATGTTAGAAAGATCCTTGACATCTGGTTTAGATGCTGAAGCTACTCATGTTGTTACTTCTGTAATAGCTCGTTAA</CDS_SEQUENCE> <PROTEIN_SEQUENCE>MSAFFLPSSSHALFLVLMLFFLTNISAQPLYISETNFTCPVDSPPSCETYVAYRAQSPNFLSLSNISDIFNLSPLRIAKASNIEAEDKKLIPDQLLLVPVTCGCTKNHSFANITYSIKQGDNFFILSITSYQNLTNYLEFKNFNPNLSPTLLPLDTKVSVPLFCKCPSKNQLNKGIKYLITYVWQDNDNVTLVSSKFGASQVEMLAENNHNFTASTNRSVLIPVTSLPKLDQPSSNGRKSSSQNLALIIGISLGSAFFILVLTLSLVYVYCLKMKRLNRSTSSSETADKLLSGVSGYVSKPTMYEIDAIMEGTTNLSDNCKIGESVYKANIDGRVLAVKKIKKDASEELKILQKVNHGNLVKLMGVSSDNDGNCFLVYEYAENGSLEEWLFSESSKTSNSVVSLTWSQRITIAMDVAIGLQYMHEHTYPRIIHRDITTSNILLGSNFKAKIANFGMARTSTNSMMPKIDVFAFGVVLIELLTGKKAMTTKENGEVVILWKDFWKIFDLEGNREERLRKWMDPKLESFYPIDNALSLASLAVNCTADKSLSRPTIAEIVLCLSLLNQPSSEPMLERSLTSGLDAEATHVVTSVIAR</PROTEIN_SEQUENCE> </MODEL> <TRANSCRIPT_SEQUENCE>TCTCTTCCCCTCATAATTTGCATTTCCTCACAACAATGTCTGCCTTCTTTCTTCCTTCTAGTTCTCATGCTCTTTTTCTTGTCCTCATGTTGTTTTTTCTCACTAACATCTCAGCTCAACCACTATATATAAGTGAAACAAACTTTACATGCCCTGTGGATTCTCCTCCTTCATGTGAAACCTATGTAGCATACAGAGCTCAGTCTCCAAATTTTTTGAGCCTATCTAACATATCTGATATTTTTAATTTGAGTCCTTTACGCATTGCAAAAGCCAGTAACATAGAAGCCGAGGATAAGAAGCTGATTCCAGATCAACTGTTACTAGTACCTGTAACTTGTGGTTGCACTAAAAATCACTCTTTCGCGAATATCACCTACTCAATCAAGCAAGGTGACAACTTCTTCATACTTTCAATCACTTCATACCAGAATCTCACCAATTATCTTGAATTTAAAAATTTCAACCCCAATCTAAGTCCAACTCTATTGCCACTAGACACCAAAGTTTCAGTCCCTTTATTCTGCAAGTGCCCTTCAAAGAATCAATTGAACAAAGGAATAAAGTATCTTATTACTTATGTGTGGCAGGATAATGACAATGTTACCCTTGTTAGTTCAAAGTTTGGTGCATCACAAGTTGAAATGTTAGCTGAAAACAATCATAACTTCACTGCTTCAACCAACCGTTCAGTTTTGATCCCTGTGACAAGTTTACCAAAACTTGATCAACCATCTTCAAATGGAAGAAAAAGCAGCAGTCAAAATCTGGCTCTTATAATTGGTATCAGCCTAGGAAGTGCTTTTTTCATTTTAGTTTTAACACTATCACTTGTGTACGTATATTGTCTCAAAATGAAGAGATTGAATAGAAGTACTTCATCGTCCGAGACTGCAGATAAGTTACTTTCAGGTGTTTCAGGTTATGTAAGCAAGCCAACAATGTATGAAATTGATGCAATCATGGAAGGTACAACGAATCTGAGTGACAATTGTAAGATTGGTGAATCAGTTTACAAGGCTAATATAGATGGTAGAGTTTTAGCAGTGAAAAAAATCAAAAAAGATGCTTCAGAGGAGCTGAAAATTCTGCAGAAGGTAAACCATGGAAATCTTGTGAAACTAATGGGTGTGTCTTCTGACAATGATGGAAACTGTTTTCTGGTCTATGAGTATGCTGAAAATGGATCACTTGAAGAGTGGTTGTTCTCGGAATCTTCGAAAACTTCAAACTCGGTGGTTTCGCTTACATGGTCTCAGAGAATAACCATTGCCATGGATGTTGCAATCGGTCTGCAATACATGCATGAACATACTTATCCACGAATAATCCACAGAGACATCACAACAAGTAATATCCTTCTTGGCTCAAATTTTAAGGCCAAGATAGCGAATTTCGGGATGGCTAGAACTTCAACCAACTCAATGATGCCGAAAATTGATGTTTTCGCTTTTGGGGTGGTTCTAATAGAGTTGTTAACTGGCAAGAAAGCTATGACAACTAAAGAAAATGGTGAGGTTGTTATTCTGTGGAAGGATTTTTGGAAGATTTTTGATCTTGAAGGGAATAGAGAAGAGAGGTTAAGAAAATGGATGGATCCTAAGTTAGAGAGTTTTTATCCTATAGATAATGCTCTAAGTTTGGCTTCTTTGGCAGTAAATTGCACTGCTGATAAATCATTGTCTAGACCAACCATTGCAGAAATTGTTCTTTGTCTTTCTCTTCTCAACCAACCATCATCTGAACCAATGTTAGAAAGATCCTTGACATCTGGTTTAGATGCTGAAGCTACTCATGTTGTTACTTCTGTAATAGCTCGTTAATCAAGTGAAGGTAATAGTGATTCAGTTTGTCATATTCAAGATGGTACTACTTTGCTTACATCTTTATGTGTGGAGTTAATTTTATGGTTAGTTTATTTAGGGAAGTGTTCTAAATTTCATTTTTTCATCTGTTATTCTTTAATGCATGAGTTTCGGTAAAGTGAATTGTAAGCTGCTATTGAACTCAAAATAAATTTGCTTATTGTACATGTTAGTGGTGAT</TRANSCRIPT_SEQUENCE> </TU> </TIGR> |