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<?xml version='1.0' encoding='ISO-8859-1'?> <TIGR> <TU> <FEAT_NAME>752.t00014</FEAT_NAME> <DATE>10-Dec-2004</DATE> <GENE_INFO> <LOCUS>AC123570_14.1</LOCUS> <COM_NAME CURATED="0" IS_PRIMARY="1">LysM domain-containing receptor-like kinase 6-related</COM_NAME> <PUB_COMMENT> </PUB_COMMENT> <IS_PSEUDOGENE>0</IS_PSEUDOGENE> <FUNCT_ANNOT_EVIDENCE TYPE="AUTO"> <ASSIGN_ACC ASSIGN_METHOD="autoBYOB">GB:AAQ73157.1:LysM domain-containing receptor-like kinase 6</ASSIGN_ACC> </FUNCT_ANNOT_EVIDENCE> <DATE>10-Dec-2004</DATE> </GENE_INFO> <COORDSET> <END5>63405</END5> <END3>65383</END3> </COORDSET> <MODEL COMMENT="IMGA|AC123570_14.1 AC123570.7 63405-65383 E EGN_Mt041209 20041210"> <FEAT_NAME>752.m00014</FEAT_NAME> <CDNA_SUPPORT> <ACCESSION>spans 18 percent of the model length</ACCESSION> <ACCESSION ANNOT_INCORP="1" DBXREF="MENS|MtD08014_GC" IS_FLI="0" UNIQUE_TO_ISOFORM="1">cDNA support spans 18 percent of the model</ACCESSION> <ACCESSION ANNOT_INCORP="1" DBXREF="MtEST|BG448539" IS_FLI="0" UNIQUE_TO_ISOFORM="1">cDNA support spans 18 percent of the model</ACCESSION> </CDNA_SUPPORT> <DATE>10-Dec-2004</DATE> <COORDSET> <END5>63504</END5> <END3>65201</END3> </COORDSET> <MODEL_ATTRIBUTE> <ATTRIBUTE_TYPE METHOD="MW,molwt_update.dbi"> <ATT_SCORE DESC="Molecular Weight">27758.95</ATT_SCORE> </ATTRIBUTE_TYPE> <ATTRIBUTE_TYPE METHOD="PI,molwt_update.dbi"> <ATT_SCORE DESC="Isoelectric point">7.2052</ATT_SCORE> </ATTRIBUTE_TYPE> <ATTRIBUTE_TYPE METHOD="SP-HMM,signalP-2.0"> <ATT_SCORE DESC="HMM-position">19</ATT_SCORE> <ATT_SCORE DESC="HMM-prediction">Signal peptide</ATT_SCORE> <ATT_SCORE DESC="HMM-SPprob">0.999</ATT_SCORE> <ATT_SCORE DESC="HMM-SAprob">0.000</ATT_SCORE> <ATT_SCORE DESC="HMM-cleavprob">0.716</ATT_SCORE> </ATTRIBUTE_TYPE> <ATTRIBUTE_TYPE METHOD="SP-NN,signalP-2.0"> <ATT_SCORE DESC="NN-position">19</ATT_SCORE> <ATT_SCORE DESC="NN-cleavsite">TES-KC</ATT_SCORE> <ATT_SCORE DESC="NN-maxY">0.865</ATT_SCORE> <ATT_SCORE DESC="NN-meanS">0.895</ATT_SCORE> </ATTRIBUTE_TYPE> <ATTRIBUTE_TYPE METHOD="targetP,targetP_update.dbi"> <ATT_SCORE DESC="Location">secreted</ATT_SCORE> <ATT_SCORE DESC="c:m:s:o scores">0.060:0.011:0.937:0.040</ATT_SCORE> <ATT_SCORE DESC="RC-value">1</ATT_SCORE> <ATT_SCORE DESC="network:peplen">plant:150</ATT_SCORE> <ATT_SCORE DESC="c:m:s:o cutoffs">0:0:0:0</ATT_SCORE> </ATTRIBUTE_TYPE> <ATTRIBUTE_TYPE METHOD="EGN_Mt041209"> <ATT_SCORE DESC="IMGA gene call evidence class">E</ATT_SCORE> </ATTRIBUTE_TYPE> </MODEL_ATTRIBUTE> <MODEL_EVIDENCE> <EVIDENCE_TYPE> <SEQUENCE_DB_MATCH> <SEARCH_DB DB_NAME="MENS|MtAA" DB_TYPE="Database of peptides predicted from Medicago truncatula EST-Clusters"> <SEQ_ELEMENT ACCESSION="MtD04912_1_AA" DESCRIPTION="spans 91 percent of the exon" FEAT_TYPE="mth2-33l22.141.1:Exon" METHOD="blastx" SCORE="91"> <ASMBL_COORDS> <COORDSET> <END5>63504</END5> <END3>64092</END3> </COORDSET> </ASMBL_COORDS> </SEQ_ELEMENT> <SEQ_ELEMENT ACCESSION="MtD06512_1_AA" DESCRIPTION="spans 91 percent of the exon" FEAT_TYPE="mth2-33l22.141.1:Exon" METHOD="blastx" SCORE="91"> <ASMBL_COORDS> <COORDSET> <END5>63504</END5> <END3>64092</END3> </COORDSET> </ASMBL_COORDS> </SEQ_ELEMENT> <SEQ_ELEMENT ACCESSION="MtD07324_1_AA" DESCRIPTION="spans 91 percent of the exon" FEAT_TYPE="mth2-33l22.141.1:Exon" METHOD="blastx" SCORE="91"> <ASMBL_COORDS> <COORDSET> <END5>63504</END5> <END3>64092</END3> </COORDSET> </ASMBL_COORDS> </SEQ_ELEMENT> </SEARCH_DB> <SEARCH_DB DB_NAME="ProDom" DB_TYPE="Protein Domain database (subset of families with at least two domains)"> <SEQ_ELEMENT ACCESSION="pd:PD023767;sp:Q9LVE3:Q9LVE3_ARATH" DESCRIPTION="spans 51 percent of the exon" FEAT_TYPE="mth2-33l22.141.1:Exon" METHOD="blastx" SCORE="51"> <ASMBL_COORDS> <COORDSET> <END5>63504</END5> <END3>64092</END3> </COORDSET> </ASMBL_COORDS> </SEQ_ELEMENT> </SEARCH_DB> </SEQUENCE_DB_MATCH> </EVIDENCE_TYPE> </MODEL_EVIDENCE> <EXON> <FEAT_NAME>752.e00050</FEAT_NAME> <DATE>Dec 10 2004 4:00PM</DATE> <COORDSET> <END5>63405</END5> <END3>64092</END3> </COORDSET> <CDS> <FEAT_NAME>752.c00050</FEAT_NAME> <DATE>Dec 10 2004 4:00PM</DATE> <COORDSET> <END5>63504</END5> <END3>64092</END3> </COORDSET> </CDS> <UTRS> <LEFT_UTR> <COORDSET> <END5>63405</END5> <END3>63503</END3> </COORDSET> </LEFT_UTR> </UTRS> </EXON> <EXON> <FEAT_NAME>752.e00051</FEAT_NAME> <DATE>Dec 10 2004 4:00PM</DATE> <COORDSET> <END5>64369</END5> <END3>64423</END3> </COORDSET> <CDS> <FEAT_NAME>752.c00051</FEAT_NAME> <DATE>Dec 10 2004 4:00PM</DATE> <COORDSET> <END5>64369</END5> <END3>64423</END3> </COORDSET> </CDS> </EXON> <EXON> <FEAT_NAME>752.e00052</FEAT_NAME> <DATE>Dec 10 2004 4:00PM</DATE> <COORDSET> <END5>64996</END5> <END3>65029</END3> </COORDSET> <CDS> <FEAT_NAME>752.c00052</FEAT_NAME> <DATE>Dec 10 2004 4:00PM</DATE> <COORDSET> <END5>64996</END5> <END3>65029</END3> </COORDSET> </CDS> </EXON> <EXON> <FEAT_NAME>752.e00053</FEAT_NAME> <DATE>Dec 10 2004 4:00PM</DATE> <COORDSET> <END5>65133</END5> <END3>65383</END3> </COORDSET> <CDS> <FEAT_NAME>752.c00053</FEAT_NAME> <DATE>Dec 10 2004 4:00PM</DATE> <COORDSET> <END5>65133</END5> <END3>65201</END3> </COORDSET> </CDS> <UTRS> <RIGHT_UTR> <COORDSET> <END5>65202</END5> <END3>65383</END3> </COORDSET> </RIGHT_UTR> </UTRS> </EXON> <CDS_SEQUENCE>ATGAAAATCAGTTTCAGTTTCATAGTTCTTATCTTGTTAATAGCTTCAACAGAATCAAAGTGTAACGAAGGTTGTAGTCTAGCTCTAGCGTCATACACCTTAAACCATGTTTCCAACCTTACATATATTTCAAACATTATGAAATCCAATGTTCTTTCAAAACCTCAAGATATCATCATCAACAACGACAAAAACAAAAGGGCGAATGTTCCCTTCCCTTGTAATTGCATCAATGGAGAGTTTCTTGCTTATACATTTCTCTATGAGCTTCAGCCAGGAGAAACATATACATCAGTTGCAGAAGAGAGTTTTTCAAATTTGACTACTGATGTTTGGATGCAAAACTTCAATGTTTATAGACCAACTAATATTCCTGATTTTGCAATGATTAAAGTTACTGTTAATTGTTCTTGTGGGAATAAAGAGGTTTCTATGGATTATGGATTGTTCATCACATATCCACTTAGAAGTGAGGACACTTTGGAGTCTATTGCTAAGGGTGCAGAGATTGAGGCTGAGTTGCTGCAGAGGTACAACCCTGGTGTTAATTTCAGCAAAGGAAGTGGTCTTGTTTTTATTCCAGGGAAAGGCACCACCACTAAGTACCAAAAACTACTATCTCTAATAGTAGCAAAGCGGACGGAATCAAAATGGAAGCTATTTGCCCCTTCACCCGAGCACAGTAGGTTTGATCTCTTACTCCTGCAAAAAGTTGGTAATTTGATTATTGTCTTTGCTGAAGTTTGA</CDS_SEQUENCE> <PROTEIN_SEQUENCE>MKISFSFIVLILLIASTESKCNEGCSLALASYTLNHVSNLTYISNIMKSNVLSKPQDIIINNDKNKRANVPFPCNCINGEFLAYTFLYELQPGETYTSVAEESFSNLTTDVWMQNFNVYRPTNIPDFAMIKVTVNCSCGNKEVSMDYGLFITYPLRSEDTLESIAKGAEIEAELLQRYNPGVNFSKGSGLVFIPGKGTTTKYQKLLSLIVAKRTESKWKLFAPSPEHSRFDLLLLQKVGNLIIVFAEV</PROTEIN_SEQUENCE> </MODEL> <TRANSCRIPT_SEQUENCE>TCTTATCTTCTTTCTTACACTAATTTATTCATTAACACTAACACAAAAACTTCAATTTTCTCTTCTTCTCTTCAAAAACCATTTGTTATATTCAACTCAATGAAAATCAGTTTCAGTTTCATAGTTCTTATCTTGTTAATAGCTTCAACAGAATCAAAGTGTAACGAAGGTTGTAGTCTAGCTCTAGCGTCATACACCTTAAACCATGTTTCCAACCTTACATATATTTCAAACATTATGAAATCCAATGTTCTTTCAAAACCTCAAGATATCATCATCAACAACGACAAAAACAAAAGGGCGAATGTTCCCTTCCCTTGTAATTGCATCAATGGAGAGTTTCTTGCTTATACATTTCTCTATGAGCTTCAGCCAGGAGAAACATATACATCAGTTGCAGAAGAGAGTTTTTCAAATTTGACTACTGATGTTTGGATGCAAAACTTCAATGTTTATAGACCAACTAATATTCCTGATTTTGCAATGATTAAAGTTACTGTTAATTGTTCTTGTGGGAATAAAGAGGTTTCTATGGATTATGGATTGTTCATCACATATCCACTTAGAAGTGAGGACACTTTGGAGTCTATTGCTAAGGGTGCAGAGATTGAGGCTGAGTTGCTGCAGAGGTACAACCCTGGTGTTAATTTCAGCAAAGGAAGTGGTCTTGTTTTTATTCCAGGGAAAGGTTAGTTTTTTAATTTTTCTGTCATGGTTTAATTGATTTCAACTCTATATGGGGATTTTGTACTTTCTGTAAAGTGGGTTTATGAAATAGCACATTAGTACACATTGTTGCTTATTCTGATTTTAGATTTTGTCAATAAGTATATCTAGGACTGAATGTGTTATATTCCATAGATGAAGTTGAGAGAAAGTTAGAAAACTTTTGTATTGATGGTAATGAGTAATATTGCAAATGAGAAAATTGACCTTTTTATGAGGTGATTACATCTATATATAGGCACCACCACTAAGTACCAAAAACTACTATCTCTAATAGTAGCAAAGCGGACGGAGTGAGTAAAGCAAGAGCCCCTGCCCTTTGGGCTTGGTCCATTTGTTAGTTGTGATACAACTAGGAGGGGATAGAGGGTGCGGGGGGCGACAGATTAAGGTAGACCTGTAATCTTGACTACAATAATTAAACAAAGTTTTGTACTATGTAATCGTAACCATTGCATAATAGAAAACTACAATAGACAACAGTCACTCTGCGACTGCAGTCCAAGGTGTAGCACATGCTAGGATAGTTAGAGTTTTGTTATTGTTAGTCAATTTGGAATTAGTTAGGAGTTAGTTACTCAATTAGTTGTGCAGCTGGGTTCTATTAATAACACTAACATTATTGTGTACAAAATTCAATATCTTTTATCAATCTATAATATATGATTCCTTAATGAGCTTTTATCTCAATGTGTATTCCTATGCTCTCTTTCTCTCCTGTGAGTATGATCTATGGCCCTATCATCCCATGATTCTTCACAGCAATCGACCGAACTCTGTAATCAATCTTTGTGTTCTTGTGCGTTTATTTATTTGATTACTTTAGAGTCGGGTTTGCCTCAATTTTCGTCCTTTCACTTTACAGATCAAAATGGAAGCTATTTGCCCCTTCACCCGAGGTATAAATTCTATACTTATTCTCCATGTTAATTTACATCAAGTTTTAATTTTTTTGACATTATCTGAAAAAACATTATAATAAATTTTCATTTTCTTTTGCAGCACAGTAGGTTTGATCTCTTACTCCTGCAAAAAGTTGGTAATTTGATTATTGTCTTTGCTGAAGTTTGATATCAATGTCTATATCTAAGCCAAGGTAAAGATATCGTCAAAGTTATAATGCCAATGTTATTTCATCTCATGTATTATAGTTTCTACATGAGCAGGTCTAGGAACTGTGGCTATTACTGGAATATCTGTTGGAGTACTAGCAGCGCTTTTACTATTGTTATTTTTTGTGTATATTAAATATT</TRANSCRIPT_SEQUENCE> </TU> </TIGR> |