| |
Input:String | |
Name:TIGRXML |
<?xml version='1.0' encoding='ISO-8859-1'?> <TIGR> <TU> <FEAT_NAME>1232.t00017</FEAT_NAME> <DATE>10-Dec-2004</DATE> <GENE_INFO> <LOCUS>AC148994_17.1</LOCUS> <COM_NAME CURATED="0" IS_PRIMARY="1">Protein kinase; Peptidoglycan-binding LysM; Serine/threonine protein kinase; Tyrosine protein kinase; Serine/threonine protein kinase, active site; Protein kinase-like</COM_NAME> <PUB_COMMENT> </PUB_COMMENT> <IS_PSEUDOGENE>0</IS_PSEUDOGENE> <FUNCT_ANNOT_EVIDENCE TYPE="CURATED"/> <DATE>10-Dec-2004</DATE> </GENE_INFO> <COORDSET> <END5>80758</END5> <END3>77688</END3> </COORDSET> <MODEL COMMENT="IMGA|AC148994_17.1 AC148994.3 80758-77688 E EGN_Mt041209 20041210"> <FEAT_NAME>1232.m00017</FEAT_NAME> <CDNA_SUPPORT> <ACCESSION>spans 66 percent of the model length</ACCESSION> <ACCESSION ANNOT_INCORP="1" DBXREF="MtGI|TC90668" IS_FLI="0" UNIQUE_TO_ISOFORM="1">cDNA support spans 59 percent of the model</ACCESSION> <ACCESSION ANNOT_INCORP="1" DBXREF="MENS|MtC90998_GC" IS_FLI="0" UNIQUE_TO_ISOFORM="1">cDNA support spans 41 percent of the model</ACCESSION> <ACCESSION ANNOT_INCORP="1" DBXREF="MENS|MtC91000_GC" IS_FLI="0" UNIQUE_TO_ISOFORM="1">cDNA support spans 6 percent of the model</ACCESSION> <ACCESSION ANNOT_INCORP="1" DBXREF="MtEST|AL379176" IS_FLI="0" UNIQUE_TO_ISOFORM="1">cDNA support spans 6 percent of the model</ACCESSION> </CDNA_SUPPORT> <DATE>10-Dec-2004</DATE> <COORDSET> <END5>80672</END5> <END3>78043</END3> </COORDSET> <MODEL_ATTRIBUTE> <ATTRIBUTE_TYPE METHOD="MW,molwt_update.dbi"> <ATT_SCORE DESC="Molecular Weight">76072.43</ATT_SCORE> </ATTRIBUTE_TYPE> <ATTRIBUTE_TYPE METHOD="PI,molwt_update.dbi"> <ATT_SCORE DESC="Isoelectric point">7.2003</ATT_SCORE> </ATTRIBUTE_TYPE> <ATTRIBUTE_TYPE METHOD="targetP,targetP_update.dbi"> <ATT_SCORE DESC="Location">secreted</ATT_SCORE> <ATT_SCORE DESC="c:m:s:o scores">0.003:0.014:0.989:0.053</ATT_SCORE> <ATT_SCORE DESC="RC-value">1</ATT_SCORE> <ATT_SCORE DESC="network:peplen">plant:150</ATT_SCORE> <ATT_SCORE DESC="c:m:s:o cutoffs">0:0:0:0</ATT_SCORE> </ATTRIBUTE_TYPE> <ATTRIBUTE_TYPE METHOD="EGN_Mt041209"> <ATT_SCORE DESC="IMGA gene call evidence class">E</ATT_SCORE> </ATTRIBUTE_TYPE> </MODEL_ATTRIBUTE> <MODEL_EVIDENCE> <EVIDENCE_TYPE> <SEQUENCE_DB_MATCH> <SEARCH_DB DB_NAME="MENS|MtAA" DB_TYPE="Database of peptides predicted from Medicago truncatula EST-Clusters"> <SEQ_ELEMENT ACCESSION="MtC50058_1_AA" DESCRIPTION="spans 98 percent of the exon" FEAT_TYPE="mth2-3c7.171.2:Exon" METHOD="blastx" SCORE="98"> <ASMBL_COORDS> <COORDSET> <END5>85697</END5> <END3>84085</END3> </COORDSET> </ASMBL_COORDS> </SEQ_ELEMENT> </SEARCH_DB> <SEARCH_DB DB_NAME="ProDom" DB_TYPE="Protein Domain database (subset of families with at least two domains)"> <SEQ_ELEMENT ACCESSION="pd:PD005680;sp:Q38708:Q38708_ALNGL" DESCRIPTION="spans 40 percent of the exon" FEAT_TYPE="mth2-3c7.171.1:Exon" METHOD="blastx" SCORE="40"> <ASMBL_COORDS> <COORDSET> <END5>86532</END5> <END3>85836</END3> </COORDSET> </ASMBL_COORDS> </SEQ_ELEMENT> </SEARCH_DB> </SEQUENCE_DB_MATCH> </EVIDENCE_TYPE> </MODEL_EVIDENCE> <EXON> <FEAT_NAME>1232.e00061</FEAT_NAME> <DATE>Dec 11 2004 12:04AM</DATE> <COORDSET> <END5>80758</END5> <END3>79820</END3> </COORDSET> <CDS> <FEAT_NAME>1232.c00061</FEAT_NAME> <DATE>Dec 11 2004 12:04AM</DATE> <COORDSET> <END5>80672</END5> <END3>79820</END3> </COORDSET> </CDS> <UTRS> <LEFT_UTR> <COORDSET> <END5>80758</END5> <END3>80673</END3> </COORDSET> </LEFT_UTR> </UTRS> </EXON> <EXON> <FEAT_NAME>1232.e00062</FEAT_NAME> <DATE>Dec 11 2004 12:04AM</DATE> <COORDSET> <END5>79229</END5> <END3>77688</END3> </COORDSET> <CDS> <FEAT_NAME>1232.c00062</FEAT_NAME> <DATE>Dec 11 2004 12:04AM</DATE> <COORDSET> <END5>79229</END5> <END3>78043</END3> </COORDSET> </CDS> <UTRS> <RIGHT_UTR> <COORDSET> <END5>78042</END5> <END3>77688</END3> </COORDSET> </RIGHT_UTR> </UTRS> </EXON> <CDS_SEQUENCE>ATGGAACTTTACAACTACATTCTTCACTTCACAGTTCTGTTCCTATGCATGTTTTCTCAGTTATTCAACTGCCAGCAAGTATACCTCAATAACACTGTCTTTGACTGCACTAACCCCTCTACTGTACCAAAAGGATACCTCTGCAATGGCCTTAAAAAATCATGTACTTCCTTTTTAGTTTTCAAGTCAAAACCTCTCTATGATAACCCTACAAAAATTGCCTACCTTCTTCGCTCTGAAGCATCAGCCATAGCCTCAATCAATAAGATCCCTTTAAATGAAAAGATTCCTTCAAATAAATCAATCATTGTCCCAGTCTTTTGTTCATGTGATGGAAATATCTACCAGCATAGTACATCTTACTCTGTAAAGCAGAATGATACTTACTATGAGTTGGTAAAAGAAACTTACCAAGGCCTTACAACCTGCCAGGCATTGATGGGTCAGAACTACTATGCTCCTGTCTCAATTCAACTTGATGCTGAGCTCACAGTTCCAATACTATGTGCTTGTCCCACAGCAAACCTGACGGCAAAAGGGGTTACCTCCTTACTCGTTCACATGGTGAACTATGGTGAAACGGTTAAGTCGATAGGAGAAGCTTATGGTGTTGATGAACATAGTATGCGAGAGGCCAATGAGTTGTCAGGGCTGCAAAGTGCAAACAGCAGTGTGATCCTCTTTGCATCGACGCCTATACTAGTTCCTCTGAGACGCAAGAATTGTAAAGAGAACTCAGATAGATTCTATTGCAAATGTTCCGAGGCACTACATGGAGATGAAAGCTCCAAGGGGATCTACTGTGACGAATCTCCTAGACGAAAAGTTCCTGCAAAATTGGTTGCTGCCTCAGGTATGGGAATTGGTACAGTCTTACTGTGTTTGTTTCTTTTGAGTTGCAAATTATATCAACACATAAAGAAAAGGAGAGCAAGTACTCATAAGGAAAAGTTATTCAGGCAAAACGGTGGTTACTTGTTACAAGAGAAGTTATCATCTTATGGAAATGGAGAAATGGCAAAGCTTTTTACGGCAGAAGAGCTGCAAAGAGCAACAGATAACTACAACCGGAGTAGATTTCTTGGTCAAGGTGGCTATGGCACGGTGTACAAAGGAATGTTACCAGATGGAACCATAGTTGCAGTTAAAAAGTCAAAAGAACTAGAAAGGAACCAGATAGAGACTTTTGTCAATGAAGTGGTCATCTTGTCACAGATCAACCACAGGAATATTGTCAAACTCTTAGGCTGTTGTCTTGAAACAGAAACTCCATTACTAGTTTATGAATTTATTCCCAACGGAACTCTTTCCCAACATATACATATGAAAGACCAAGAGTCCTCCCTTTCATGGGAAAACCGCCTAAGAATTGCATGTGAAGTTGCTGGAGCAGTGGCATATATGCATTTTTCGGCTTCTATTCCAATCTTCCACAGAGACATAAAACCCACAAACATACTACTAGACAGTAACTTTAGTGCCAAGGTATCTGATTTTGGGACATCAAGATCAATACCACTAGATAAGACTCACCTAACCACATTTGTAGGTGGAACTTACGGGTACATAGATCCTGAATATTTCCAGTCCAATCAATTCACTAATAAGAGTGATGTATACAGTTTCGGGGTCGTGCTTGTAGAGCTCATAACCAGTAGAAAGCCTATTTCATTCTATGATGAAGATGACGGTCAGAATTTGATTGCACATTTCATTTCAGTGATGAAGGAGAACCAAGTTTCTCAAATTATAGATGCTAGACTGCAAAAGGAAGCAGGGAAAGACACCATTCTTGCCATTTCAAGTCTTGCAAGGAGATGCTTGAGACTTAATCATAAGAAAAGACCAACAATGAAAGAAGTTTCAGCAGAATTAGAAACACTAAGAAAGGCACAAAGTTCTTTTGAAATCAACCATGATCATGATTCTTCATCAAGTGATGAAGAATCATTTGGGCACGGAATTAATGAATCAACAGACCAAGAGTCCAAAGAGGAAAGCAATTTATTTTCCTTACAAATAGAATCCGCGTCCTTCTGA</CDS_SEQUENCE> <PROTEIN_SEQUENCE>MELYNYILHFTVLFLCMFSQLFNCQQVYLNNTVFDCTNPSTVPKGYLCNGLKKSCTSFLVFKSKPLYDNPTKIAYLLRSEASAIASINKIPLNEKIPSNKSIIVPVFCSCDGNIYQHSTSYSVKQNDTYYELVKETYQGLTTCQALMGQNYYAPVSIQLDAELTVPILCACPTANLTAKGVTSLLVHMVNYGETVKSIGEAYGVDEHSMREANELSGLQSANSSVILFASTPILVPLRRKNCKENSDRFYCKCSEALHGDESSKGIYCDESPRRKVPAKLVAASGMGIGTVLLCLFLLSCKLYQHIKKRRASTHKEKLFRQNGGYLLQEKLSSYGNGEMAKLFTAEELQRATDNYNRSRFLGQGGYGTVYKGMLPDGTIVAVKKSKELERNQIETFVNEVVILSQINHRNIVKLLGCCLETETPLLVYEFIPNGTLSQHIHMKDQESSLSWENRLRIACEVAGAVAYMHFSASIPIFHRDIKPTNILLDSNFSAKVSDFGTSRSIPLDKTHLTTFVGGTYGYIDPEYFQSNQFTNKSDVYSFGVVLVELITSRKPISFYDEDDGQNLIAHFISVMKENQVSQIIDARLQKEAGKDTILAISSLARRCLRLNHKKRPTMKEVSAELETLRKAQSSFEINHDHDSSSSDEESFGHGINESTDQESKEESNLFSLQIESASF</PROTEIN_SEQUENCE> </MODEL> <TRANSCRIPT_SEQUENCE>CCGCGTGATAAGAACTAAACCATCTCTTTAAACACTGAAAACAATTGAAGTGTAACTCATTTCTTGTCTTCTCTAGAAACTTAATCATGGAACTTTACAACTACATTCTTCACTTCACAGTTCTGTTCCTATGCATGTTTTCTCAGTTATTCAACTGCCAGCAAGTATACCTCAATAACACTGTCTTTGACTGCACTAACCCCTCTACTGTACCAAAAGGATACCTCTGCAATGGCCTTAAAAAATCATGTACTTCCTTTTTAGTTTTCAAGTCAAAACCTCTCTATGATAACCCTACAAAAATTGCCTACCTTCTTCGCTCTGAAGCATCAGCCATAGCCTCAATCAATAAGATCCCTTTAAATGAAAAGATTCCTTCAAATAAATCAATCATTGTCCCAGTCTTTTGTTCATGTGATGGAAATATCTACCAGCATAGTACATCTTACTCTGTAAAGCAGAATGATACTTACTATGAGTTGGTAAAAGAAACTTACCAAGGCCTTACAACCTGCCAGGCATTGATGGGTCAGAACTACTATGCTCCTGTCTCAATTCAACTTGATGCTGAGCTCACAGTTCCAATACTATGTGCTTGTCCCACAGCAAACCTGACGGCAAAAGGGGTTACCTCCTTACTCGTTCACATGGTGAACTATGGTGAAACGGTTAAGTCGATAGGAGAAGCTTATGGTGTTGATGAACATAGTATGCGAGAGGCCAATGAGTTGTCAGGGCTGCAAAGTGCAAACAGCAGTGTGATCCTCTTTGCATCGACGCCTATACTAGTTCCTCTGAGACGCAAGAATTGTAAAGAGAACTCAGATAGATTCTATTGCAAATGTTCCGAGGCACTACATGGAGATGAAAGCTCCAAGGGGATCTACTGTGACGAATCTCCTAGACGAAAAGTTCCTGCAAAATTGGTTGCTGCCTCAGGTATATTTGTCTACTCTAAACCCTCTTCAAGAACAACTTTAAAAAAGTATAGGTTTTAGTGAAATAGTGGATTTTACATTTTAGCATAGCTAGTTAGGTTTGAAATTATGGGTTTTAGTTCAAAGAAGAAAAATAGGAAGAAATATAATTATAGTGAAATTTACTCAATACTAACTTGATACAAAGACTAAACTCTAACATCTATTTACAGAAATACATAGAATCAATCCTAGATAAATAGGAAAATCAGAAAATAAATAATCATAATAATGAGTAATATGTAAATTAATCCTAAGAGATAATCTAAAATACGCTAAGATTATACACTGATCCTAAGAAATAATCTAACATGCTCTAATATAATATCAAATATATTATAAGCTGTGTTTTCTTATATTTCTAATTGTTAGTAAGGATACAGGTAGGTAGATAAGGCTAGAATGTTTAAAAGTAATGCCTTAGCTATGCAGACATCTTGCAAGGCTTTTAGTGGAATAAACATAGTACTTTTCTGTTTGCTATTGAATATAAGGATGTTTCTTGCTAGTCACGGCAACCAACTGAATTTGAAAAAATAACTGTATTTGCAGGTATGGGAATTGGTACAGTCTTACTGTGTTTGTTTCTTTTGAGTTGCAAATTATATCAACACATAAAGAAAAGGAGAGCAAGTACTCATAAGGAAAAGTTATTCAGGCAAAACGGTGGTTACTTGTTACAAGAGAAGTTATCATCTTATGGAAATGGAGAAATGGCAAAGCTTTTTACGGCAGAAGAGCTGCAAAGAGCAACAGATAACTACAACCGGAGTAGATTTCTTGGTCAAGGTGGCTATGGCACGGTGTACAAAGGAATGTTACCAGATGGAACCATAGTTGCAGTTAAAAAGTCAAAAGAACTAGAAAGGAACCAGATAGAGACTTTTGTCAATGAAGTGGTCATCTTGTCACAGATCAACCACAGGAATATTGTCAAACTCTTAGGCTGTTGTCTTGAAACAGAAACTCCATTACTAGTTTATGAATTTATTCCCAACGGAACTCTTTCCCAACATATACATATGAAAGACCAAGAGTCCTCCCTTTCATGGGAAAACCGCCTAAGAATTGCATGTGAAGTTGCTGGAGCAGTGGCATATATGCATTTTTCGGCTTCTATTCCAATCTTCCACAGAGACATAAAACCCACAAACATACTACTAGACAGTAACTTTAGTGCCAAGGTATCTGATTTTGGGACATCAAGATCAATACCACTAGATAAGACTCACCTAACCACATTTGTAGGTGGAACTTACGGGTACATAGATCCTGAATATTTCCAGTCCAATCAATTCACTAATAAGAGTGATGTATACAGTTTCGGGGTCGTGCTTGTAGAGCTCATAACCAGTAGAAAGCCTATTTCATTCTATGATGAAGATGACGGTCAGAATTTGATTGCACATTTCATTTCAGTGATGAAGGAGAACCAAGTTTCTCAAATTATAGATGCTAGACTGCAAAAGGAAGCAGGGAAAGACACCATTCTTGCCATTTCAAGTCTTGCAAGGAGATGCTTGAGACTTAATCATAAGAAAAGACCAACAATGAAAGAAGTTTCAGCAGAATTAGAAACACTAAGAAAGGCACAAAGTTCTTTTGAAATCAACCATGATCATGATTCTTCATCAAGTGATGAAGAATCATTTGGGCACGGAATTAATGAATCAACAGACCAAGAGTCCAAAGAGGAAAGCAATTTATTTTCCTTACAAATAGAATCCGCGTCCTTCTGAATCACCGGATTGATACTCCTTTTTTGCTACCCCCAACGTAATTAGTAGTCCTTGACTCTCAAATCCCAATAGTTATCCACACAGGTTAGGCCCTTTAGATCCACTCTAGGACTAATTCTCGAGTTGGCAGTAGGGCATCTAGTTTTTTACACGCAGGGTTGGGCTACCTTATACTTGATTCATTATGTTTTGTGCTTGATTTTCAGCATAGGAATGAAGATGTATCTATACTATAGATGGCTTAGGATAAATGACTTATATTATTTAGCTTGTTTAAATCAAAAATTGGACAAACAATTGTTAGTAATTACTCCGCTCTGTTTCATAATAATAGTCACTTCTGCATTTTTTTATC</TRANSCRIPT_SEQUENCE> </TU> </TIGR> |